View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13813_high_2 (Length: 516)
Name: NF13813_high_2
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13813_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 23871047 - 23871548
Alignment:
| Q |
1 |
actaggacggaaaggagtacaatttaaaaaagagtatttcaggaaaaatgagagagatcctcttttcaaagaaaaatagttgtaaattgttttttgaaca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||| |||||| || |
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| T |
23871047 |
actaggacgggaaggagtacaatttaaaaaagagtatttcagaaaaaatgagagaaaaccttttttcaaagaaaaatagttgtaaattttttttttt-ca |
23871145 |
T |
|
| Q |
101 |
agcgaaaaacagttgtaaattatatgtttcccaaacataaatagaaccatttgttttcaaaatttgttcaaacttcaaacccaaaataccagttattccc |
200 |
Q |
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| T |
23871146 |
agcgaaaaacaagtgtaaattatatgtttcccaaacataaatagaaccatttgttttcaaaagttgttcaaacctcaaaccccaaataccagttattcgc |
23871245 |
T |
|
| Q |
201 |
ccaagtaa--tcaataccaacaaagagtaaaactatgagaccataaataaatatgaaccttttgattgtgctaaggcctctgcttcccaaaaccagagca |
298 |
Q |
| |
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|||||||| |||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23871246 |
ccaagtaacatcaataccaacaaaaaataaaattatgagaccataaaaaaatatgaaccttttgattgtgctaaggcctctgcttcccaaaaccagagca |
23871345 |
T |
|
| Q |
299 |
tctagctttagatcttcaatagagtccataagtttctgtcttgcatcaccccagtacagttttgcaacaacgctcacctataaaatacaatctcacaagg |
398 |
Q |
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| T |
23871346 |
tctagctttagatcttcaatagagtccataagtttctgtcttgcatcaccccagtacagttttgcaacaacgctcacctataaaatacaatctcacaagg |
23871445 |
T |
|
| Q |
399 |
at--nnnnnnnnnntatgggtaaccttgaaaactagactctagagtaaggttttgaaataaagatcagaaactgtgatcgaggtcacaatactatgcttt |
496 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23871446 |
ataaaaaaaaaatatatgggtaaccttgaaaattagactctagagtaaggttttgaaataaagatcagaaactgtgatcgaggtcacaatactatgcttt |
23871545 |
T |
|
| Q |
497 |
ttt |
499 |
Q |
| |
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||| |
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| T |
23871546 |
ttt |
23871548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 6277846 - 6277970
Alignment:
| Q |
254 |
aaccttttgattgtgctaaggcctctgcttcccaaaaccagagcatctagctttagatcttcaatagagtccataagtttctgtcttgcatcaccccagt |
353 |
Q |
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||||||| |||||||| || || ||||| |||| ||| |||| ||| | ||| |||||||||| || ||||||||||||| ||||||||||||||||| |
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| T |
6277846 |
aacctttgaattgtgctgagacccctgctacccataacaagagaatccaacttcagatcttcaacagcatccataagtttctctcttgcatcaccccagt |
6277945 |
T |
|
| Q |
354 |
acagttttgcaacaacgctcaccta |
378 |
Q |
| |
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||| ||||| |||||| ||||||| |
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| T |
6277946 |
acacttttgtaacaacattcaccta |
6277970 |
T |
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