View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13813_high_6 (Length: 264)
Name: NF13813_high_6
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13813_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 52630934 - 52631197
Alignment:
| Q |
1 |
tgcttaacctcccaaaatccaatgaagctgcttctaattcagcggcctccgtgcttacttcaccttcaagtcctatgtggaggatctccgttaatgtttg |
100 |
Q |
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| T |
52630934 |
tgcttaacctcccaaaatccaatgaagctgcttctaatttagcggcctccgtgcttacttcaccttcaagtcctatgtggaggatctccgttaatgtttg |
52631033 |
T |
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| Q |
101 |
atccactgttaatccttcagatacaattatacggcatatggtgaatgtcaacagaatagtaacaacgttcttgatgttgttcttcacggttgccattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631034 |
atccactgttaatccttcagatacaattatacggcatatggtgaatgtcaacagaatagtaacaacgttcttgatgttgttcttcacggttgccattgat |
52631133 |
T |
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| Q |
201 |
gattatttannnnnnncaaaccctatatatctatgatattgtatataacggaaaactaattata |
264 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631134 |
gattatttatttttttcaaaccctatatatctatgatattgtatataacggaaaactaattata |
52631197 |
T |
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