View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13813_low_1 (Length: 649)

Name: NF13813_low_1
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13813_low_1
NF13813_low_1
[»] chr5 (7 HSPs)
chr5 (10-649)||(14959548-14960187)
chr5 (518-585)||(4855594-4855661)
chr5 (546-585)||(14257346-14257385)
chr5 (548-587)||(30845200-30845239)
chr5 (545-592)||(35135811-35135858)
chr5 (326-381)||(41016240-41016295)
chr5 (322-358)||(1084088-1084124)
[»] chr7 (4 HSPs)
chr7 (546-578)||(3501115-3501147)
chr7 (521-596)||(25507236-25507311)
chr7 (546-580)||(2221851-2221885)
chr7 (548-580)||(22388576-22388608)
[»] chr3 (4 HSPs)
chr3 (322-358)||(22667488-22667524)
chr3 (322-358)||(22724127-22724163)
chr3 (532-586)||(4534477-4534531)
chr3 (327-355)||(11041180-11041208)
[»] chr1 (4 HSPs)
chr1 (547-587)||(21516252-21516292)
chr1 (548-579)||(24153164-24153195)
chr1 (547-579)||(23902213-23902245)
chr1 (553-585)||(35666981-35667013)
[»] chr2 (2 HSPs)
chr2 (520-579)||(10150657-10150716)
chr2 (547-586)||(33197390-33197429)
[»] chr4 (2 HSPs)
chr4 (546-580)||(41162203-41162237)
chr4 (545-586)||(34621819-34621860)
[»] scaffold0024 (1 HSPs)
scaffold0024 (554-587)||(23805-23838)
[»] chr6 (1 HSPs)
chr6 (545-585)||(30865355-30865395)


Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 10 - 649
Target Start/End: Complemental strand, 14960187 - 14959548
Alignment:
Q  10 ttaaattatggtgtgcaaaattctatcttgttcatttctgtagtttccacaagaaaaataaatgttagcattcttgagaaaatgaagaatgaaaatatac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14960187 ttaaattatggtgtgcaaaattctatcttgttcatttctgtagtttccacaagaaaaataaatgttagcattcttgagaaaatgaagaatgaaaatatac 14960088  T
Q  110 tcactttgataaatgcagtttatttcaccctgcagtccacttaggctgacatcactgcattaaagcagcattatggttatgcactcaaactccacatgac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14960087 tcactttgataaatgcagtttatttcaccctgcagtccacttaggctgacatcactgcattaaagcagcattatggttatgaactcaaactccacatgac 14959988  T
Q  210 atcactgatgtgggaaaaaattaagttaacaagactgccaattctatatagtaagtttgaataaatagcttaattaagaacttagagcttgtttggattg 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959987 atcactgatgtgggaaaaaagtaagttaacaagactgccaattctatatagtaagtttgaataaatagcttaattaagaacttagagcttgtttggattg 14959888  T
Q  310 aattatttgaacctgacataagcacttgtgggactgtttgagagagtttgtggcatcaacttatggcatgttaaggggcttttcttagcttatttccata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14959887 aattatttgaacctgacataagcacttgtgggactgtttgagagagtttgtggcatcaacttatgacatgttaaggggcttttcttagcttatttccata 14959788  T
Q  410 cataagctcttaaagatagcttacgtaaatagcttatataaaaaatggtttttatcttacagctgttatagaaatacccgtatacataagtttgagttat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14959787 cataagctcttaaagatagcttacgtaaatagcttatataaaaaatggtttttatcttacagctgttatagaaatacccgtatacataagcttgagttat 14959688  T
Q  510 cttataactgttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacaggttctaagtcatgtccaatgttt 609  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959687 cttataaccgttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacaggttctaagtcatgtccaatgttt 14959588  T
Q  610 aacacttgaactttgaacattaaccttgacttttaaagac 649  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14959587 aacacttgaactttgaacattaaccttgacttttaaagac 14959548  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 585
Target Start/End: Complemental strand, 4855661 - 4855594
Alignment:
Q  518 tgttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaaca 585  Q
    ||||||| || || || |||| ||| |||||||| ||||||| |||||||||||||||||||| ||||    
T  4855661 tgttataaaaatagctaatacataagtacttatgctataagtatttaattaagttgtttatccaaaca 4855594  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 585
Target Start/End: Complemental strand, 14257385 - 14257346
Alignment:
Q  546 cttatgttataagtgtttaattaagttgtttatcccaaca 585  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  14257385 cttatgttataagtgcttaattaagttgtttatccaaaca 14257346  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 587
Target Start/End: Complemental strand, 30845239 - 30845200
Alignment:
Q  548 tatgttataagtgtttaattaagttgtttatcccaacagg 587  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  30845239 tatgttataagtgcttaattaagttgtttatccaaacagg 30845200  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 545 - 592
Target Start/End: Original strand, 35135811 - 35135858
Alignment:
Q  545 acttatgttataagtgtttaattaagttgtttatcccaacaggttcta 592  Q
    ||||||| ||| |||||| |||||||||||||||||||||||| ||||    
T  35135811 acttatgctatgagtgttgaattaagttgtttatcccaacagggtcta 35135858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 41016295 - 41016240
Alignment:
Q  326 cataagcacttgtgggactgtttgagagagtttgtggcatcaacttatggcatgtt 381  Q
    ||||||||||||| ||||||| | ||||||||| ||| | ||||||||||||||||    
T  41016295 cataagcacttgtaggactgtataagagagtttatggaaacaacttatggcatgtt 41016240  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 1084088 - 1084124
Alignment:
Q  322 ctgacataagcacttgtgggactgtttgagagagttt 358  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1084088 ctgacataagcacttgtgaaactgtttgagagagttt 1084124  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 3501115 - 3501147
Alignment:
Q  546 cttatgttataagtgtttaattaagttgtttat 578  Q
    |||||||||||||||||||||||||||||||||    
T  3501115 cttatgttataagtgtttaattaagttgtttat 3501147  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 596
Target Start/End: Complemental strand, 25507311 - 25507236
Alignment:
Q  521 tatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacaggttctaagtc 596  Q
    ||||||| || ||||||| |||| ||||||  || ||||| ||||||||||||||||||| |||||| || |||||    
T  25507311 tatagaaataacttatacataaacacttatcctaaaagtgcttaattaagttgtttatccaaacagggtcaaagtc 25507236  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 580
Target Start/End: Complemental strand, 2221885 - 2221851
Alignment:
Q  546 cttatgttataagtgtttaattaagttgtttatcc 580  Q
    |||||| ||||||||||||||||||||||||||||    
T  2221885 cttatgctataagtgtttaattaagttgtttatcc 2221851  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 580
Target Start/End: Original strand, 22388576 - 22388608
Alignment:
Q  548 tatgttataagtgtttaattaagttgtttatcc 580  Q
    ||||||||||| |||||||||||||||||||||    
T  22388576 tatgttataagcgtttaattaagttgtttatcc 22388608  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 22667524 - 22667488
Alignment:
Q  322 ctgacataagcacttgtgggactgtttgagagagttt 358  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22667524 ctgacataagcacttgtgagactgtttgagagagttt 22667488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 22724163 - 22724127
Alignment:
Q  322 ctgacataagcacttgtgggactgtttgagagagttt 358  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22724163 ctgacataagcacttgtgagactgtttgagagagttt 22724127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 4534477 - 4534531
Alignment:
Q  532 cttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacag 586  Q
    |||||||||||  ||||||  |||||||| ||||||||||||||||||| |||||    
T  4534477 cttatacgtaagcacttatactataagtgcttaattaagttgtttatccaaacag 4534531  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 355
Target Start/End: Original strand, 11041180 - 11041208
Alignment:
Q  327 ataagcacttgtgggactgtttgagagag 355  Q
    |||||||||||||||||||||||||||||    
T  11041180 ataagcacttgtgggactgtttgagagag 11041208  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 587
Target Start/End: Complemental strand, 21516292 - 21516252
Alignment:
Q  547 ttatgttataagtgtttaattaagttgtttatcccaacagg 587  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  21516292 ttatgttataagcgtttaattaagttgtttatccaaacagg 21516252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 579
Target Start/End: Complemental strand, 24153195 - 24153164
Alignment:
Q  548 tatgttataagtgtttaattaagttgtttatc 579  Q
    ||||||||||||||||||||||||||||||||    
T  24153195 tatgttataagtgtttaattaagttgtttatc 24153164  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 23902213 - 23902245
Alignment:
Q  547 ttatgttataagtgtttaattaagttgtttatc 579  Q
    |||||||||||||| ||||||||||||||||||    
T  23902213 ttatgttataagtgattaattaagttgtttatc 23902245  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 585
Target Start/End: Original strand, 35666981 - 35667013
Alignment:
Q  553 tataagtgtttaattaagttgtttatcccaaca 585  Q
    |||||||||||||||||||||||||||| ||||    
T  35666981 tataagtgtttaattaagttgtttatccaaaca 35667013  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 579
Target Start/End: Complemental strand, 10150716 - 10150657
Alignment:
Q  520 ttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatc 579  Q
    |||||||| || ||||||| |||| |||||| | ||||||| ||||||||||||||||||    
T  10150716 ttatagaaataacttatacataaacacttatataataagtgcttaattaagttgtttatc 10150657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 586
Target Start/End: Original strand, 33197390 - 33197429
Alignment:
Q  547 ttatgttataagtgtttaattaagttgtttatcccaacag 586  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  33197390 ttatgttataagtgtttaatttagttgtttatccaaacag 33197429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 580
Target Start/End: Original strand, 41162203 - 41162237
Alignment:
Q  546 cttatgttataagtgtttaattaagttgtttatcc 580  Q
    ||||||||||||||| |||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttatcc 41162237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 586
Target Start/End: Complemental strand, 34621860 - 34621819
Alignment:
Q  545 acttatgttataagtgtttaattaagttgtttatcccaacag 586  Q
    ||||||||| |||||||||| ||||||||||||||| |||||    
T  34621860 acttatgttgtaagtgtttagttaagttgtttatccaaacag 34621819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 587
Target Start/End: Complemental strand, 23838 - 23805
Alignment:
Q  554 ataagtgtttaattaagttgtttatcccaacagg 587  Q
    ||||||||||||||||||||||||||| ||||||    
T  23838 ataagtgtttaattaagttgtttatccaaacagg 23805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 585
Target Start/End: Complemental strand, 30865395 - 30865355
Alignment:
Q  545 acttatgttataagtgtttaattaagttgtttatcccaaca 585  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  30865395 acttatgttataaatgcttaattaagttgtttatccaaaca 30865355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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