View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13813_low_11 (Length: 243)

Name: NF13813_low_11
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13813_low_11
NF13813_low_11
[»] chr8 (5 HSPs)
chr8 (65-131)||(8697630-8697696)
chr8 (65-131)||(10646847-10646913)
chr8 (65-131)||(40486190-40486256)
chr8 (65-131)||(45278433-45278499)
chr8 (103-131)||(41307731-41307759)
[»] chr7 (2 HSPs)
chr7 (65-131)||(25059865-25059931)
chr7 (65-131)||(2911280-2911346)
[»] chr3 (4 HSPs)
chr3 (65-131)||(12094837-12094903)
chr3 (65-131)||(44277187-44277253)
chr3 (74-131)||(19911803-19911860)
chr3 (65-96)||(40931910-40931941)
[»] chr1 (3 HSPs)
chr1 (65-131)||(3943315-3943381)
chr1 (65-127)||(9588929-9588991)
chr1 (65-131)||(13984724-13984789)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 8697630 - 8697696
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  8697630 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacata 8697696  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 10646913 - 10646847
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  10646913 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacata 10646847  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 40486190 - 40486256
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  40486190 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacata 40486256  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 45278433 - 45278499
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||||||    
T  45278433 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacata 45278499  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 41307731 - 41307759
Alignment:
Q  103 ttgtattggcatgctattttcaatacata 131  Q
    |||||||||||||||||||||||||||||    
T  41307731 ttgtattggcatgctattttcaatacata 41307759  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 25059865 - 25059931
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  25059865 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacata 25059931  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 2911280 - 2911346
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||||||    
T  2911280 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacata 2911346  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 12094903 - 12094837
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    |||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  12094903 ttgataaccgaagcatgacaagagaagttgaaaaaaaattgtattggcatgctattttcaatacata 12094837  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 44277187 - 44277253
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||||||    
T  44277187 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacata 44277253  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 19911860 - 19911803
Alignment:
Q  74 gaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    |||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  19911860 gaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacata 19911803  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 40931941 - 40931910
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaa 96  Q
    ||||||||||||||||||||||||||||||||    
T  40931941 ttgataaccgaagcatgataagagaagttgaa 40931910  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 3943381 - 3943315
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||||||    
T  3943381 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacata 3943315  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 9588991 - 9588929
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaata 127  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  9588991 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaata 9588929  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 13984724 - 13984789
Alignment:
Q  65 ttgataaccgaagcatgataagagaagttgaattgtttttgtattggcatgctattttcaatacata 131  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  13984724 ttgataaccgaagcatgataagagaagttgaa-aaaaattgtattggcatgctattttcaatacata 13984789  T

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