View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13813_low_3 (Length: 389)
Name: NF13813_low_3
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13813_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 18993305 - 18993025
Alignment:
| Q |
7 |
gtttccagccggaagccggtattagtacgacgtcactggctaacaagagacatggagattcttttcgcggtgacaatggcgggggagacacgacgatcaa |
106 |
Q |
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| T |
18993305 |
gtttccagccggaagccggtattagtacgacgtcactggctaacaagagacatggagattcttttcgcggtgacaatggcgggagagacacgacgatcaa |
18993206 |
T |
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| Q |
107 |
ccgagatggtgcagtgtatggtgaaggtgacatgttgtgggaaagttgggggtgaattgtacatgagggaggtgagtttagtgatggaggatatggaagg |
206 |
Q |
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| T |
18993205 |
ccgagatggtccagtgtatggtgaaggtgacatgttgtgggaaagttgggggtgaattgtacatgagggaggtgagtttagtaatggaggatatggaagg |
18993106 |
T |
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| Q |
207 |
aggggaggttagtgggaaagaaggggttgggatattgatgaaggcaatggagtttggagagaggaagaaagttagtgaagt |
287 |
Q |
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| T |
18993105 |
aggggaggttagtgggaaagaaggggttgggatattgatgaaggcaatggagtttggagagaggaagaaagttagtgaagt |
18993025 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 36516646 - 36516695
Alignment:
| Q |
112 |
atggtgcagtgtatggtgaaggtgacatgttgtgggaaagttgggggtga |
161 |
Q |
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| T |
36516646 |
atggtgcagtgtatggtgaaggtcacgtgctgtgggaaagttgggggtga |
36516695 |
T |
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