View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13813_low_4 (Length: 362)
Name: NF13813_low_4
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13813_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 32 - 347
Target Start/End: Complemental strand, 25565212 - 25564903
Alignment:
| Q |
32 |
aatacagtacaatttctttatagcttagctaaagctatctctaacaacatctgatcgatgnnnnnnnataaattggatccaagacctgtttattgcgctc |
131 |
Q |
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| T |
25565212 |
aatacaatagaatttctttatagcttagctaaagctatccctaacaacatctgatcgatgcttttttataaattggatccaagacctgtttattgcgctc |
25565113 |
T |
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| Q |
132 |
cttctcattctcattgatatctctaattcgtgttgttcttcttaacttcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatc |
231 |
Q |
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| T |
25565112 |
cttctcatt------gatatctctaattcgtgtagttcttcttaacttcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatc |
25565019 |
T |
|
| Q |
232 |
gcgctattcttgggtccctttgcttcttccccttccttcaatttttctttatacatttttctcaaaacatatgcttctgcaagatcaactcccattgcca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25565018 |
gcgctattcttgggtccctttgcttcttccccttccttcaatttttctttatacatttttctcaaaacatatgcttctgcaagatcaactcccattgcca |
25564919 |
T |
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| Q |
332 |
ttttatgtgtcctctt |
347 |
Q |
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|||||||||||||||| |
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| T |
25564918 |
ttttatgtgtcctctt |
25564903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 140 - 347
Target Start/End: Complemental strand, 25589361 - 25589154
Alignment:
| Q |
140 |
tctcattgatatctctaattcgtgttgttcttcttaacttcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatcgcgctatt |
239 |
Q |
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|||||||||| |||||||||||||| |||||| || |||||||||||||||||| |||||| ||||||||||| | ||| | | ||||| |||||| |
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| T |
25589361 |
tctcattgatgtctctaattcgtgtaattcttcctagcttcttagaaaaccaaaacaaacatccacttgatctttgggtctttgcttcaatcatgctatt |
25589262 |
T |
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| Q |
240 |
cttgggtccctttgcttcttccccttccttcaatttttctttatacatttttctcaaaacatatgcttctgcaagatcaactcccattgccattttatgt |
339 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||| |||| ||||| || ||| |||||||||||| ||||||||||| |||||| |||| |
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| T |
25589261 |
cttgggtccctttgcttcttctccttccttcattttttctttacacatctttcttaacacacatgcttctgcaacatcaactcccactgccatcttatac |
25589162 |
T |
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| Q |
340 |
gtcctctt |
347 |
Q |
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|||||||| |
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| T |
25589161 |
gtcctctt |
25589154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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