View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13813_low_7 (Length: 282)
Name: NF13813_low_7
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13813_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 13103082 - 13102861
Alignment:
| Q |
18 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttttccttgcttgacagaa |
117 |
Q |
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| T |
13103082 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttttccttgcttgacagaa |
13102983 |
T |
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| Q |
118 |
tttttatattagggtgcttacgatttgattctttcatgtcattgtaatctctgctagattttgttgacattattgtgtgtttggtatgatattatttttc |
217 |
Q |
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| T |
13102982 |
tttttatattagggtgcttacgatttgattctttcatgtcattgtaatctctgctagattttgttgacattcttgtgtgattggtatgatatcatttttc |
13102883 |
T |
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| Q |
218 |
aaggatggaagaactgcagatg |
239 |
Q |
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| T |
13102882 |
aaggatggaagaactgcagatg |
13102861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 13095622 - 13095531
Alignment:
| Q |
148 |
ctttcatgtcattgtaatctctgctagattttgttgacattattgtgtgtttggtatgatattatttttcaaggatggaagaactgcagatg |
239 |
Q |
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| T |
13095622 |
ctttcatgtcattgtaatctctgctagattttgttgacattcttgtgtctttggtatgatactatttttcaaggatggaagaactgcggatg |
13095531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 13114056 - 13113973
Alignment:
| Q |
18 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttt |
101 |
Q |
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| T |
13114056 |
cacagagacattgagattgtaccctgtactccctgttgtatgtaccttctaccaatttcttcaaaaccatcttgaattattttt |
13113973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 13113769 - 13113703
Alignment:
| Q |
172 |
tagattttgttgacattattgtgtgtttggtatgatattatttttcaaggatggaagaactgcagatg |
239 |
Q |
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| T |
13113769 |
tagattttgatgatatttttgtgtctt-gttatgatactatttttcaaggatggaagaactgctgatg |
13113703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 18670853 - 18670919
Alignment:
| Q |
172 |
tagattttgttgacattattgtgtgtttggtatgatattatttttcaaggatggaagaactgcagatg |
239 |
Q |
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| T |
18670853 |
tagattttgatgatatttttgtgtctt-gttatgatactatttttcaaggatggaagaactgctgatg |
18670919 |
T |
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