View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13813_low_9 (Length: 260)

Name: NF13813_low_9
Description: NF13813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13813_low_9
NF13813_low_9
[»] chr2 (4 HSPs)
chr2 (13-243)||(28783303-28783533)
chr2 (49-243)||(28742355-28742546)
chr2 (49-243)||(28735273-28735464)
chr2 (49-243)||(28700269-28700463)
[»] chr8 (7 HSPs)
chr8 (128-243)||(2050773-2050885)
chr8 (128-243)||(2055182-2055294)
chr8 (49-243)||(2029482-2029673)
chr8 (105-243)||(10768506-10768641)
chr8 (128-243)||(1948561-1948673)
chr8 (49-243)||(2034041-2034232)
chr8 (49-243)||(2058006-2058197)
[»] chr1 (2 HSPs)
chr1 (65-243)||(16439171-16439346)
chr1 (201-241)||(33761949-33761989)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 28783303 - 28783533
Alignment:
Q  13 aaaatatactacataagtagaatagtaaaaaagattaacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaat 112  Q
    ||||||||||||| ||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28783303 aaaatatactacagaagtagaatagaaaagaagaagaacttgcctgtagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaat 28783402  T
Q  113 ccacttgttctggtgaagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagtt 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783403 ccacttgttctggtgaaaaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagtt 28783502  T
Q  213 aattctggttcaggacaagcaggatagtaat 243  Q
    |||||||||||||||||||||||||||||||    
T  28783503 aattctggttcaggacaagcaggatagtaat 28783533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 28742355 - 28742546
Alignment:
Q  49 aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat 148  Q
    |||||||||| |||| |||||||| ||||| ||||||||| ||| ||||||| |||| ||||||||||||   || |||||||||||| |||||||||||    
T  28742355 aacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaatccactttcccttgtgaagaacttgaaggccaccaat 28742454  T
Q  149 atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||| ||   ||||||||||| |||||| |||| ||||||||||||||| | ||||||||| ||||| | ||||||||||||||||||||||||||    
T  28742455 atggtc---ttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaatgtggttcaggacaagcaggatagtaat 28742546  T

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Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 28735273 - 28735464
Alignment:
Q  49 aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat 148  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||  |||  || |||| ||| |||||||| |  |||| ||||||||| || ||||||||    
T  28735273 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccaccaat 28735372  T
Q  149 atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||| ||   ||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28735373 atggtc---ttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaat 28735464  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 28700269 - 28700463
Alignment:
Q  49 aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat 148  Q
    |||||||||| ||||||||||| | |||||||||||||||  |  |||  || |||| ||| ||||||||||  |||||||||||||| |||||||||||    
T  28700269 aacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccggtggtacatcgatccacttgtcttggtgaagaacttgaaggccaccaat 28700368  T
Q  149 atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    |  |   ||||| ||||||| ||||||||||| |  |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28700369 aatacggtcttggagaagcactgtgagaaaactaacatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaat 28700463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 2050885 - 2050773
Alignment:
Q  128 aagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcagga 227  Q
    |||||||||||||||||||||||| ||   ||||||||||| |||||| |||  | |||||||||| ||||| ||||| | ||| |||||||||||||||    
T  2050885 aagaacttggaggccaccaatatggtc---ttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcagga 2050789  T
Q  228 caagcaggatagtaat 243  Q
    |||| |||||| ||||    
T  2050788 caaggaggataataat 2050773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 2055294 - 2055182
Alignment:
Q  128 aagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcagga 227  Q
    |||||||||||||||||||||||| ||   ||||||||||| |||||| |||  | |||||||||| ||||| ||||| | ||| |||||||||||||||    
T  2055294 aagaacttggaggccaccaatatggtc---ttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcagga 2055198  T
Q  228 caagcaggatagtaat 243  Q
    |||| ||| |||||||    
T  2055197 caaggagggtagtaat 2055182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 2029673 - 2029482
Alignment:
Q  49 aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat 148  Q
    |||||||||| | |||||||||||||||||| || |||||  || |||  || | |||||||||||| || |  |  | |||||||||||||||||||||    
T  2029673 aacttgcctgcaaaagatcaccaacattaactacgagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaat 2029574  T
Q  149 atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||| ||   ||| ||||||| |||||| |||  | | ||| |||| ||||| ||||||| ||| ||||||||||||||||||| |||||| ||||    
T  2029573 atggtc---ttggagaagcactgtgaggaaatcattgtcacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataat 2029482  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 10768641 - 10768506
Alignment:
Q  105 atatcaatccacttgttctggtgaagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttc 204  Q
    ||||||||||| || | ||| | |||||||||||||||||||||||| ||   ||| |||||||  ||||| |||  | |||||||||| || || ||||    
T  10768641 atatcaatccatttatcctgataaagaacttggaggccaccaatatggtc---ttggagaagcacagtgaggaaatcattatcagaatgcttggttgttc 10768545  T
Q  205 ccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||| ||| ||||||||||||||||||| |||||| ||||    
T  10768544 ccacagtcaattctggttcaggacaaggaggataataat 10768506  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 1948561 - 1948673
Alignment:
Q  128 aagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcagga 227  Q
    |||||||||||| ||||||||||| ||   ||| ||||||| ||||||||||| |   || ||||| || || ||||||||||| | |||||||||||||    
T  1948561 aagaacttggagaccaccaatatggtc---ttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcagga 1948657  T
Q  228 caagcaggatagtaat 243  Q
    |||| |||||| ||||    
T  1948658 caagaaggataataat 1948673  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 2034232 - 2034041
Alignment:
Q  49 aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat 148  Q
    |||||||||| ||||||||||| |||| |||||  |||||  || |||  || | |||||||||||| ||||  |  |  |||||||| || |||||||     
T  2034232 aacttgcctgcagaagatcaccgacatcaacaatgagagctccaggtacaggtgttatatcaatccatttgtcgtcatacagaacttgaagaccaccaac 2034133  T
Q  149 atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||| ||   ||| ||||||| |||||| |||  | |||||||||| ||||| ||||| | ||| ||||||||||||||||||| ||| |||||||    
T  2034132 atggtc---ttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaat 2034041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 2058197 - 2058006
Alignment:
Q  49 aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat 148  Q
    |||||||||| |||||||||||||||||||| |  |||||  || |||  || | |||||||||||| || |  |  | |||||||||||| ||||||||    
T  2058197 aacttgcctgaagaagatcaccaacattaactaggagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 2058098  T
Q  149 atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||| ||   ||| ||||||| ||| || |||  | |||||||||| || || ||||||| ||| ||||||||||| ||| ||| |||||| ||||    
T  2058097 atggtc---ttgtagaagcattgtcaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataat 2058006  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 16439346 - 16439171
Alignment:
Q  65 atcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaatatgatcatcttgaaga 164  Q
    |||||| | ||||||||||||||| |||||||  ||||||| |||||||||| | |  |  |||||||||||||| |||||  ||||   |||||| |||    
T  16439346 atcaccgatattaacaacaagagcctcatgtagaggaggtacatcaatccacatatctttatgaagaacttggagaccacctgtatg---atcttgtaga 16439250  T
Q  165 agcaatgtga-gaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaat 243  Q
    ||||  |||| |||| |||| ||| | ||||||| ||||||||| |||||| || |||||||| || ||  |||||||||    
T  16439249 agcaccgtgatgaaatcaac-atctgcatgttttatggttcccaaagttaactcgggttcagggcaggccagatagtaat 16439171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 33761949 - 33761989
Alignment:
Q  201 gttcccatagttaattctggttcaggacaagcaggatagta 241  Q
    ||||||||||||||||| |||||||| || |||||||||||    
T  33761949 gttcccatagttaattcgggttcagggcatgcaggatagta 33761989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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