View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_high_1 (Length: 834)

Name: NF13814_high_1
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_high_1
NF13814_high_1
[»] chr1 (5 HSPs)
chr1 (16-545)||(4679305-4679834)
chr1 (53-446)||(29464835-29465229)
chr1 (64-469)||(15593996-15594404)
chr1 (182-446)||(29214509-29214775)
chr1 (515-616)||(15593801-15593903)
[»] chr7 (11 HSPs)
chr7 (30-498)||(8658295-8658763)
chr7 (37-494)||(1300391-1300851)
chr7 (53-446)||(8666403-8666796)
chr7 (53-446)||(10495162-10495555)
chr7 (53-446)||(13334156-13334549)
chr7 (53-448)||(8653423-8653824)
chr7 (183-446)||(8671990-8672253)
chr7 (53-451)||(8586497-8586895)
chr7 (217-436)||(8653177-8653402)
chr7 (227-324)||(3146373-3146470)
chr7 (180-435)||(8615710-8615965)
[»] chr2 (2 HSPs)
chr2 (77-448)||(16658335-16658703)
chr2 (53-450)||(16662786-16663183)
[»] chr4 (1 HSPs)
chr4 (53-446)||(9336682-9337075)
[»] chr3 (2 HSPs)
chr3 (82-204)||(53416876-53416997)
chr3 (74-206)||(53417432-53417564)
[»] chr8 (1 HSPs)
chr8 (523-603)||(1767146-1767227)
[»] chr6 (2 HSPs)
chr6 (218-324)||(28910483-28910589)
chr6 (273-361)||(12488667-12488755)


Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Original strand, 4679305 - 4679834
Alignment:
Q  16 gtttgatcttttgtgtccagatgctcctcgtgacacacccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatg 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679305 gtttgatcttttgtgtccagatgctcctcgtggcacacccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatg 4679404  T
Q  116 tctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679405 tctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcg 4679504  T
Q  216 aggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679505 aggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaattt 4679604  T
Q  316 aaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4679605 aaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataacgaacagaaagaaatagatgttctt 4679704  T
Q  416 gaggatcatctgaaggagctggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttctttattcagaaaagtgctca 515  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679705 gaggatcatctgaaggagttggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttctttattcagaaaagtgctca 4679804  T
Q  516 aacatattacttaaattgtttccgttttct 545  Q
    |||||||||||||||||||||| |||||||    
T  4679805 aacatattacttaaattgtttctgttttct 4679834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 53 - 446
Target Start/End: Complemental strand, 29465229 - 29464835
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    |||||||||||||||||| | || |||| |||||||| |||||||||| ||||||| ||||| ||||| |  |||| |||   ||||||||| || ||||    
T  29465229 cccttggaggtatgcttttccattgatgaaaatggcatcctaactgttactgctaaggaaatatctactgacaatatgaatgtgatcaccattactaatg 29465130  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
      |||||||||||  |||| ||  || || ||||| ||||| |||||||||||||||| |  | |||||||| | ||||  |||||||||| || |||||    
T  29465129 gcaaagaaaggttatcaacgttagaaattgaaaaaatgattaaagaagctgagaaataccatgtggaagatatgcaattcgtaaggaaggccaatgtaat 29465030  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctc-tcttgtgatgaaagtgaaaagatcaacga 351  Q
    ||||||||| || | ||||||||||||||| |||||| | ||||||||||||| ||||||||| | |||| ||   | | |||||||| ||||||||| |    
T  29465029 gagtgcattagattcttgtgtttacaatatgaagaatacattaaagaagaaggttgttaatttgatgctcttcccatcaagaaagtgagaagatcaacaa 29464930  T
Q  352 tgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    ||||||||| ||  |    || |||||||||||||||||| || ||||||||| | |||||||||||| ||||||| ||||||||||||||||||    
T  29464929 tgcaattactgtctctgtgaatttgcttgataagaataacaaaaagaaagaaacagatgttcttgagggtcatctggaggagctggagagcatgt 29464835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 64 - 469
Target Start/End: Complemental strand, 15594404 - 15593996
Alignment:
Q  64 atgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaagg 163  Q
    |||||||||||| |||| |||||  | ||| ||||||||||  || ||||  || || || ||||| ||| ||||||| ||||||||||| |||||||||    
T  15594404 atgctttgctatcgatgaaaatgctatcctgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 15594305  T
Q  164 ttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaatgagtgcattgg 263  Q
    ||| || ||| | || |||||||| ||||| ||||||| ||| ||||||| |  |||||| |||||||  ||||||||||  ||||||||| |||||| |    
T  15594304 ttgtcagcatatgaaattaaaaaaatgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattag 15594205  T
Q  264 aattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacggt 363  Q
    |    |||||||||||  | |  |||||| | ||||| |||||||| || ||||| ||||||| | | |||  |  ||||||||| | ||||||||| ||    
T  15594204 atgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagatcaatggtgcaattacagt 15594105  T
Q  364 ggccaccaacttgcttgat---aagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttggaaaagcttgaa 460  Q
    ||| || || |||||||||   ||||||||| | || || ||| || |||||||||||| | || |||||||||| ||||||||||| ||||| |||| |    
T  15594104 ggctacaaatttgcttgataagaagaataaccagcataatgaagtagatgttcttgagggtaatttgaaggagctcgagagcatgttcgaaaaccttgta 15594005  T
Q  461 gtcaagact 469  Q
    |||||||||    
T  15594004 gtcaagact 15593996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 182 - 446
Target Start/End: Original strand, 29214509 - 29214775
Alignment:
Q  182 aaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaata 281  Q
    |||||| ||||| |||||||||||||||| |  | |||||||| | |||| ||||||||||| ||||||| ||||||||| || | ||||||||||||||    
T  29214509 aaaaaattgattaaagaagctgagaaataccatgtggaagatatgcaattcttaaggaaggccaaggtaacgagtgcattagattcttgtgtttacaata 29214608  T
Q  282 tcaagaatgctttaaag-aagaaggatgttaatttaaagctct-cttgtgatgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttgctt 379  Q
    | || ||| |||||||| |||| || ||||||||| ||||||| |   | | |||||||| ||||||||| ||| ||||||  | |     || ||||||    
T  29214609 tgaaaaatactttaaagaaagacggttgttaatttgaagctctccccctcaagaaagtgagaagatcaacaatgtaattactatcgttgtgaatttgctt 29214708  T
Q  380 gataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    |||||||||||| || ||||| ||||| |||||||| ||| ||||||  ||||||||||||||||||    
T  29214709 gataagaataacaaagagaaataaatagatgttctttagggtcatctcgaggagctggagagcatgt 29214775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 515 - 616
Target Start/End: Complemental strand, 15593903 - 15593801
Alignment:
Q  515 aaacatattacttaaattgtttccgttttctgtcttgtttt-tagttttattaacttatttaaagaccttgcttccagataaagatccctctcaggctct 613  Q
    |||||| || ||||||||||||  ||||||||||||||||| |||||||| || | ||||| || |||||||||||| || ||||||||| |||||| ||    
T  15593903 aaacatgttgcttaaattgtttgtgttttctgtcttgttttctagttttagtagcatatttgaaaaccttgcttccaaatcaagatccctatcaggcact 15593804  T
Q  614 tgt 616  Q
    |||    
T  15593803 tgt 15593801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-99; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 30 - 498
Target Start/End: Complemental strand, 8658763 - 8658295
Alignment:
Q  30 gtccagatgctcctcgtgacacacccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatac 129  Q
    |||||| ||||||||||| ||| |||||||||||||| ||| | ||  ||| ||||||||   |||| ||||| ||||| ||||| ||| |||||||||     
T  8658763 gtccaggtgctcctcgtggcactcccttggaggtatgtttttcaatcaatgaaaatggcattttaacagtttcggctaaggaaatatcttcaggaaatat 8658664  T
Q  130 gaacaagatcaccataaccaatgaaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaa 229  Q
    |||| |||||||||||| ||||||||||||||| ||| |||||||| || |||| ||| |||||||||||||||||| ||| ||   |||||||||| ||    
T  8658663 gaaccagatcaccataaacaatgaaaaagaaagattgtcaacatttgaaattaacaaaatgattgaagaagctgagagataccgtatggaagataaggaa 8658564  T
Q  230 tttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtg 329  Q
    |||||||||||||| || ||||||| ||  ||||| | ||||||||||||  | |||||||| ||||| |||||||||||||||||||| |||||  |||    
T  8658563 tttttaaggaaggccaaagtaatgaatgatttggattattgtgtttacaaagtgaagaatgcgttaaaaaagaaggatgttaatttaaacctctcccgtg 8658464  T
Q  330 atgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaa 429  Q
      ||||| |||||||||||| |||||| |||  |||| || ||||||||| || |||||||| ||||| |  ||||| ||||| ||||||||||||||||    
T  8658463 gagaaagggaaaagatcaacaatgcaactaccttggcaacaaacttgcttcatgagaataacaaacagcagaaaatagatgttgttgaggatcatctgaa 8658364  T
Q  430 ggagctggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttcttt 498  Q
    ||||||||| | ||||||||||||||||| |||||| ||| ||| |||||| |||||||||||||||||    
T  8658363 ggagctggaaatcatgttggaaaagcttgtagtcaatactggcattgagaataagcacaaatcttcttt 8658295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 37 - 494
Target Start/End: Complemental strand, 1300851 - 1300391
Alignment:
Q  37 tgctcctcgtgacacacccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaag 136  Q
    ||||||||||| ||| |||||||||||||| ||| ||||| ||| ||||||||   |||| |||||||| || ||||| |||||||||||||||||  ||    
T  1300851 tgctcctcgtggcacccccttggaggtatgtttttctataaatgaaaatggcattttaacagtttctgccaaggaaatatctacaggaaatacgaatcag 1300752  T
Q  137 atcaccataaccaatgaaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaa 236  Q
    |||||||| | ||||||||||||||| ||| |||||||| || |||| ||| |||||| ||| ||||||||||| | |  |||||||||||| |||||||    
T  1300751 atcaccatcaacaatgaaaaagaaagattgtcaacatttgaaattaacaaaatgattgcagatgctgagaaataccacatggaagataagaagtttttaa 1300652  T
Q  237 ggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaag 336  Q
     |||||| |  ||||||| ||  ||||| | ||||||||||||  | |||||||| |||||||||||||||||||||||||| |||||  || | |||||    
T  1300651 agaaggccacagtaatgaatgatttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaag 1300552  T
Q  337 tgaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacga---acagaaagaaataaatgttcttgaggatcatctgaaggag 433  Q
     |||||||||||| |||||||||| ||  | || | ||||||||||||||||||| |   |||| |  ||||| ||||| ||||||||||||| ||||||    
T  1300551 ggaaaagatcaacaatgcaattaccgtcacaacaagcttgcttgataagaataacaacaaacagcagaaaatagatgttgttgaggatcatctcaaggag 1300452  T
Q  434 ctggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatctt 494  Q
    |||||||   ||||||||||||||| |||||| ||| ||| |||||| || | ||||||||    
T  1300451 ctggagattttgttggaaaagcttgtagtcaatactggcattgagaataaacccaaatctt 1300391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 53 - 446
Target Start/End: Complemental strand, 8666796 - 8666403
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    |||||||||||||||||| | || |||| |||||| | ||| |||||| ||||||  ||||| || ||||| |||| ||||| |||||||||||||||||    
T  8666796 cccttggaggtatgcttttcaattgatgaaaatggtatcctgactgttactgctagggaaatatccacaggcaatatgaacatgatcaccataaccaatg 8666697  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||| |||  ||  |  || ||||| ||||| |||||||||||||||| |  | |||||||| | |||||||||| | ||| ||||||||    
T  8666696 acaaagaaaggttgtcaatgttcgacattgaaaaaatgattaaagaagctgagaaataccatgtggaagatatgcaatttttaagaagggccaaggtaat 8666597  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
    | ||| ||| || | ||||||||||||||| ||||| |||||||||||||||||||||||| | |  |||||   | | |||| || |||||||||| ||    
T  8666596 gtgtgaattagattcttgtgtttacaatatgaagaaggctttaaagaagaaggatgttaatctgattctctcccctcaagaaattgcaaagatcaacaat 8666497  T
Q  353 gcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    |||||||| || || |   | |||||||||||||||||  || ||||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  8666496 gcaattactgttgctatggatttgcttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggagagaatgt 8666403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 53 - 446
Target Start/End: Original strand, 10495162 - 10495555
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    |||||||||||||||||| | || |||| |||||||| ||| |||||| ||||||| || || |||||||| |||| ||||  ||||||||| || ||||    
T  10495162 cccttggaggtatgcttttccattgatgaaaatggcatcctgactgttactgctaaggatatatctacaggcaatatgaacgcgatcaccattactaatg 10495261  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||| |||  ||  || |||||||| ||||| |||||||| ||||||| |  |  ||||||| |||||| ||||||||||| ||||||||    
T  10495262 acaaagaaaggttgtcaatgttagaaattaaaaaaatgattaaagaagctaagaaataccatgtcgaagatatgaaattcttaaggaaggccaaggtaat 10495361  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
    ||||||||| || | ||||||||||||||| |||||  |||||||||||||||| |||||| | |  |||||   | | |||| ||| ||||||| | ||    
T  10495362 gagtgcattagattcttgtgtttacaatatgaagaacactttaaagaagaaggacgttaatctcatcctctccgctcaagaaattgagaagatcagcaat 10495461  T
Q  353 gcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    ||||||||  | || |  || ||||||||||||| |||  || ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  10495462 gcaattacttttgctatgaatttgcttgataagagtaataaagagaaaaaaatagatgttcttgagaatcatctggaggagctggagagcatgt 10495555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 53 - 446
Target Start/End: Original strand, 13334156 - 13334549
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    |||||||||||||||||| | || |||| |||||||| ||| || ||| ||||||| || || |||||||| |||| ||||  ||||||||| || ||||    
T  13334156 cccttggaggtatgcttttccattgatgaaaatggcatcctgacggttactgctaaggatatatctacaggcaatatgaacgcgatcaccattactaatg 13334255  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||  |||  ||  || || ||||| ||||| |||||||| || |||| |  |  |||||||||||||| ||||||||||| ||||||||    
T  13334256 acaaagaaaggttatcaatgttagaaattgaaaaaatgattaaagaagctaaggaataccatgtcgaagataagaaattcttaaggaaggccaaggtaat 13334355  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
    || |||||| || | ||||||||||||||| |||||  ||||||||||||| || |||||| | |  |||||   | | |||| | | ||||||| | ||    
T  13334356 gaatgcattagattcttgtgtttacaatatgaagaacactttaaagaagaaagacgttaatctcatcctctcccctcaagaaattaagaagatcagcaat 13334455  T
Q  353 gcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    ||||||||  | || |  || |||||||||||||||||  || ||||||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13334456 gcaattacttttgctatgaatttgcttgataagaataataaagagaaagaaatagatgttcttgagggtcatctcgaggagctggagagcatgt 13334549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 53 - 448
Target Start/End: Complemental strand, 8653824 - 8653423
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    |||||||||||||||||| | || |||| |||||| | | |||||||||||| ||| || ||  | || |||| |  |||| |||||||||| || ||||    
T  8653824 cccttggaggtatgcttttccattgatgaaaatggtatcttaactgtttctggtaaggatatcaccactggaattctgaacgagatcaccatcactaatg 8653725  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||| |||  ||| || || |||||  ||||||||||||||||||||| || | |||||||| ||||||||| |||||||| || |||||    
T  8653724 agaaagaaaggttgtcaaagtttgaaattgaaaaaaagattgaagaagctgagaaataccgtgtggaagatatgaaatttttgaggaaggccaaagtaat 8653625  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
     || |||||||| | ||||||||||||||| |||| |||||| || | |||||||||| || |||  |||||   | | ||||||||  |||||||| ||    
T  8653624 aagcgcattggattcttgtgtttacaatataaagagtgctttgaatatgaaggatgttgatctaatcctctcccctcaagaaagtgagcagatcaacaat 8653525  T
Q  353 gcaattacggtggccaccaacttgcttg------ataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    |||||||  || ||||  || ||||| |      ||||||||||| |||| | ||||||| ||||||||||| ||||||| |||||| || | |||||||    
T  8653524 gcaattattgttgccatgaatttgctcgaaatgaataagaataaccaacatatagaaatagatgttcttgagcatcatcttaaggagatgaacagcatgt 8653425  T
Q  447 tg 448  Q
    ||    
T  8653424 tg 8653423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 183 - 446
Target Start/End: Original strand, 8671990 - 8672253
Alignment:
Q  183 aaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatat 282  Q
    ||||| ||||| ||||||||||||||||||  | |||||||| | |||||||||| | ||| ||||||||| ||||||| || | |||||||||||||||    
T  8671990 aaaaaatgattaaagaagctgagaaatatcatgtggaagatatgcaatttttaagaagggccaaggtaatgtgtgcattagattcttgtgtttacaatat 8672089  T
Q  283 caagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttgcttgat 382  Q
     ||||| |||||| |||||||  |||||||| | |  |||||   | | |||| || |||||||||| |||||||||| || || |   | |||||||||    
T  8672090 gaagaacgctttagagaagaacaatgttaatctgattctctcccctcaagaaattgcaaagatcaacaatgcaattactgttgctatggatttgcttgat 8672189  T
Q  383 aagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    | ||||||  || ||||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  8672190 atgaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggagagaatgt 8672253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 53 - 451
Target Start/End: Original strand, 8586497 - 8586895
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    ||||| |||||||||||  | || |||| |||||| | ||||||||||||||| || ||||| ||  | || ||||| ||| | || || ||||||||||    
T  8586497 ccctttgaggtatgcttcaccatcgatgaaaatggtatcctaactgtttctgcgaaggaaatatcctctggcaatacaaacgaaataacgataaccaatg 8586596  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||  |  |   | || |||||| ||||||| ||||||| |||   || | ||  || ||| |||||||  |||||||||||||||||||    
T  8586597 acaaagaaaggttatcggctgatgaaattaaaagactgattcaagaagcagaggtgtacctcgctgaggatcagaaattcctaaggaaggctaaggtaat 8586696  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
    || | |||| ||   ||||||||||||  | | ||||||| ||||||| |||||| ||||  |||||  ||||| | |  ||  | ||||||||||  ||    
T  8586697 gaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttctcaaaaagttaaaaagatcaatcat 8586796  T
Q  353 gcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttggaa 451  Q
    ||||||||  |||| || || |||||||||||||||||| |  |||| || ||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  8586797 gcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttgagagcatgttggaa 8586895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 217 - 436
Target Start/End: Complemental strand, 8653402 - 8653177
Alignment:
Q  217 ggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaattta 316  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||| | ||| ||| | ||||| | ||||||||| || | ||||||||||||| ||    
T  8653402 ggaagatatgaaatttttaaggaaggccacggtaatgagtgcattggattcttgcgttaagaatataacgaatgctttgaatacgaaggatgttaatcta 8653303  T
Q  317 aagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttgcttg------ataagaataacgaacagaaagaaataaatg 410  Q
    |   ||||   | | |||||||||||||||||| ||||||||   | |||||  || |||||||      ||||||||||| |||||| | | ||| |||    
T  8653302 atcatctcccctcaagaaagtgaaaagatcaacaatgcaatttttggggccatgaatttgcttgataagaataagaataaccaacagataaatatagatg 8653203  T
Q  411 ttcttgaggatcatctgaaggagctg 436  Q
    |||||||| ||||||| |||||||||    
T  8653202 ttcttgagcatcatctcaaggagctg 8653177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 3146470 - 3146373
Alignment:
Q  227 aaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctc 324  Q
    |||||| |||||||||| || ||||||| |||||| || | |||||||||||| || || ||||||||||||||||||||||| ||| |||| |||||    
T  3146470 aaatttctaaggaaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtgaatataaatctctc 3146373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 435
Target Start/End: Complemental strand, 8615965 - 8615710
Alignment:
Q  180 ttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaa 279  Q
    |||||||||||||| ||||||| ||| | || ||||  |||||| | |||||  |||||||||| |||||||||| || ||| ||    ||  |||||||    
T  8615965 ttaaaaaactgattcaagaagcagaggagtaccgcgctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcatttacaa 8615866  T
Q  280 tatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttgctt 379  Q
      | | ||||||| ||||||| |||||||||  ||||||||| || | | |  ||  |||||| |||||| |||||||||| ||||| || || ||||||    
T  8615865 gttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaatttgctt 8615766  T
Q  380 gataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagct 435  Q
    |||| ||||||| | ||||  ||| || | ||||| || |||||||||||||||||    
T  8615765 gataggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggagct 8615710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 77 - 448
Target Start/End: Original strand, 16658335 - 16658703
Alignment:
Q  77 gatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaaggttgacaacatttc 176  Q
    |||| |||||| | |||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||      
T  16658335 gatgaaaatggtatcctaactgtttctgctaaggaagtatctacaggaaatacaaacaagatcaccataaccaatgaaaaagaaagattgtcaaccttgg 16658434  T
Q  177 aagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgttta 276  Q
    || |||||||| |||||||||||||||||| ||| | || |||||||||||||||||||   ||||| |||||||||| ||||||||| | |||||||||    
T  16658435 aaattaaaaaaatgattgaagaagctgagagataccacgtggaagataagaaatttttacaaaaggccaaggtaatgaatgcattggattattgtgttta 16658534  T
Q  277 caatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacggtggccaccaacttg 376  Q
    |||||| ||||||||||||   ||||| ||||| |||||||||||||| | | | |||| ||| ||||||||| |||||||||| |||||||| |  |||    
T  16658535 caatatgaagaatgcttta---aagaaagatgtgaatttaaagctctcctctcaagaaattgagaagatcaacaatgcaattactgtggccacaagtttg 16658631  T
Q  377 cttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttg 448  Q
    ||||||||||||||| |||| || |||| | |||||||||||  ||||||||||||| ||||||||||||||    
T  16658632 cttgataagaataacaaacaaaatgaaacagatgttcttgagtttcatctgaaggagatggagagcatgttg 16658703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 53 - 450
Target Start/End: Original strand, 16662786 - 16663183
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    |||||||| |||||||||||||| |||| ||| |||| | |||||||||| ||  | ||||  || || |||| || |||  ||||||| ||||||||||    
T  16662786 cccttggatgtatgctttgctatcgatgaaaacggcatcttaactgtttcagcagaggaaagatccaccggaagtaagaatgagatcacgataaccaatg 16662885  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||  | | | |  || || ||||| ||||| |||||||| || | || |  |  |||||| |||||||  |||||||||| ||||||||    
T  16662886 acaaagaaaggttatccagagtcgaaattgaaaaattgattcaagaagctaaggagtaccatgctgaagatgagaaattcctaaggaaggccaaggtaat 16662985  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
    || |||||| ||    ||  |||||||  | | ||||||| ||||||| ||| |||| || |||||||| ||||   |  ||| | ||||||||||  ||    
T  16662986 gaatgcattagatgactgcatttacaaattgaggaatgctctaaagaataagaatgtcaaattaaagctttctttccaaaaaaataaaaagatcaatcat 16663085  T
Q  353 gcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttgga 450  Q
    |||||||||||||| |   | |||||| || |||| ||| |   ||| ||| || |||||||||||||||||||||||||||| ||||| ||||||||    
T  16663086 gcaattacggtggctaaagatttgcttcatgagaagaaccaggggaatgaagtagatgttcttgaggatcatctgaaggagcttgagagtatgttgga 16663183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 53 - 446
Target Start/End: Original strand, 9336682 - 9337075
Alignment:
Q  53 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 152  Q
    ||||||||||  |||||| | || |||| |||||||| |||||||||| ||||||  ||||| |||||||| |||| ||||   |||||||| || ||||    
T  9336682 cccttggaggcctgcttttcgattgatgaaaatggcatcctaactgttactgctagggaaatatctacaggcaatatgaacgcaatcaccattactaatg 9336781  T
Q  153 aaaaagaaaggttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaat 252  Q
    | |||||||||||| |||  ||  |  || ||||| ||||| ||||||||| ||||||||  | |||||||| | |||||||||| | ||| ||||||||    
T  9336782 acaaagaaaggttgtcaatgttcgacattgaaaaaatgattaaagaagctgcgaaatatcatgtggaagatatgcaatttttaagaagggccaaggtaat 9336881  T
Q  253 gagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgat 352  Q
    | ||||||| || | ||||||||||||||| ||||| ||||||||||||||  |||||||| | |  ||| |   | | |||| ||| ||||||||| ||    
T  9336882 gtgtgcattagattcttgtgtttacaatatgaagaacgctttaaagaagaacaatgttaatctgattctcacgcctcaagaaattgagaagatcaacaat 9336981  T
Q  353 gcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 446  Q
    |||||||| || || |  || |||||||||||||||||| || ||||||||||| |||||||||||| ||||||| |||| || ||||||||||    
T  9336982 gcaattactgttgctatgaatttgcttgataagaataacaaagagaaagaaatagatgttcttgagggtcatctggaggatctagagagcatgt 9337075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 53416876 - 53416997
Alignment:
Q  82 aaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaaggttgacaacatttcaagtt 181  Q
    |||||| | |||||||||||||||||| ||||| |||| | |||||| |||| |||| |||||||||| ||| |||||||||||| ||||| || |  ||    
T  53416876 aaatggtatcctaactgtttctgctaaggaaatatctagaagaaataagaactagat-accataaccagtgacaaagaaaggttgtcaacaattgatatt 53416974  T
Q  182 aaaaaactgattgaagaagctga 204  Q
     ||||| ||||||||||||||||    
T  53416975 gaaaaaatgattgaagaagctga 53416997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 53417564 - 53417432
Alignment:
Q  74 atagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaaggttgacaacat 173  Q
    ||||||| |||||| | |||||| ||||||||||| |||||  ||| | |||||| |||| ||||||||||||||| | | || ||||||| | ||| |     
T  53417564 atagatgaaaatggtatcctaaccgtttctgctaaggaaataactagaagaaataagaacgagatcaccataaccattaacaaggaaaggtggtcaataa 53417465  T
Q  174 ttcaagttaaaaaactgattgaagaagctgaga 206  Q
    || || || ||||| | ||||||||||||||||    
T  53417464 ttgaaattgaaaaaataattgaagaagctgaga 53417432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 1767227 - 1767146
Alignment:
Q  523 tacttaaattgtttccgttttctgtcttgttttt-agttttattaacttatttaaagaccttgcttccagataaagatccct 603  Q
    ||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||| || |||||||||| |||| |||||||||    
T  1767227 tacttaaattgtttctgttttctttcttgttttttagttttagtaacatatttgaaaaccttgcttcaagatcaagatccct 1767146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 324
Target Start/End: Complemental strand, 28910589 - 28910483
Alignment:
Q  218 gaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaa 317  Q
    |||||| | |||||| |||| ||||| || ||||||| ||||||  | | |||||||||||| || ||||||| |||||| |||||||||  |||| |||    
T  28910589 gaagatgaaaaatttctaagaaaggccaatgtaatgaatgcattacattattgtgtttacaagatgaagaatgatttaaacaagaaggatactaatctaa 28910490  T
Q  318 agctctc 324  Q
    |||||||    
T  28910489 agctctc 28910483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 12488667 - 12488755
Alignment:
Q  273 tttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacg 361  Q
    ||||||| || ||||||||| |||||| |||||||||||| ||||||||||| | | | |||| ||| ||||||||  |||| ||||||    
T  12488667 tttacaagatgaagaatgctctaaagaggaaggatgttaaattaaagctctcatctaaagaaaatgataagatcaatcatgcgattacg 12488755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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