View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_15 (Length: 461)
Name: NF13814_high_15
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 1743363 - 1742919
Alignment:
| Q |
1 |
attggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagtttgtcttccatttcttttaac |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743363 |
attggaagaaatttcattcttccaatgcttcaagatatcccaagatggaattgcttctgctatccgaatgaggccaagtttgtcttccatttcttttaac |
1743264 |
T |
|
| Q |
101 |
attgaaaagaaaagaatacatggacctggtttgacacccctacctattaacttggatttgattgactcattcgtgagcttgaacagattaaatgctattg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
1743263 |
atcgaaaagaaaagaatacatggacctggtttgactcccttacctattaacttggatttgatcgattcattcgtgagcttgaaaagattaaatgctattg |
1743164 |
T |
|
| Q |
201 |
atttgtcaaattcttttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaacttgtcttgcaagactgttgcaactt |
300 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||| ||| | ||| | ||| |||||||||||||||| | ||||||||||||||||| |
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| T |
1743163 |
atttatcaaattcttttatatcggatgagtttcttatctcagtcgcagacggtgctgttaattttctgaaaaaacttgtccttcaagactgttgcaactt |
1743064 |
T |
|
| Q |
301 |
tacattttcaggaatcttttatgttttatccaaatgtcaatatgttcaattcttagatcttcgaaaagctgactttctaactgatcaatgtatcaacaag |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
1743063 |
tacattttcaggaatattttatgttttatccaaatgtcaatatgttcaatccttagatcttcgtaaagccgactttctaactgatcaatgtatcaacaag |
1742964 |
T |
|
| Q |
401 |
ttatcgatatttcttcataacttgacctctataaaccttagtggt |
445 |
Q |
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| T |
1742963 |
ttatcgatatttcttattaacttgacctctataaaccttagtggt |
1742919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 441
Target Start/End: Original strand, 2007021 - 2007459
Alignment:
| Q |
3 |
tggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagtttgtcttccatttcttttaacat |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||| |||||||||| |||| || || |||||||| |
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| T |
2007021 |
tggaagaaattttattcttccaatgtttcaaaatatcccaagttggaattgcttctgcgatccgaatgatgccaagtttggcttcgatatcctttaacat |
2007120 |
T |
|
| Q |
103 |
tgaaaagaaaagaatacatggacctggtttgacacccctacctattaacttggatttgattgactcattcgtgagcttgaacagattaaatgctattgat |
202 |
Q |
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| T |
2007121 |
tgaaaagaaaagaagacatggacctggtttgacacccctacctattaacttggatttgatcgattcattcgtgagcttgaagagattaaaagctattgat |
2007220 |
T |
|
| Q |
203 |
ttgtcaaattcttttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaacttgtcttgcaagactgttgcaacttta |
302 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||||| | | ||| ||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
2007221 |
ttgtcaaattcctttatatcggatgagtttcttatctcagttgcaaagggtgctgttgagtgtctgaaaaaacttgtcctgcaagactgttgcaacttta |
2007320 |
T |
|
| Q |
303 |
cattttcaggaatcttttatgttttatccaaatgtcaatatgttcaattcttagatcttcgaaaagctgactttctaactgatcaatgtatcaacaagtt |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2007321 |
cattttcaggaatcttttatgttttatccaaatgtcaatatgttcaatgcttagattttcgaaaagctgactttctaactgatcaatgtatcaacaagtt |
2007420 |
T |
|
| Q |
403 |
atcgatatttcttcataacttgacctctataaaccttag |
441 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| |
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| T |
2007421 |
ttcaatatttcttcataacttgacctctataaaccttag |
2007459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 1498475 - 1498791
Alignment:
| Q |
9 |
aaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagtttgtcttccatttcttttaacattgaaaa |
108 |
Q |
| |
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|||||||||||||| |||||| |||||| |||||| ||| ||| || ||| ||| ||| | || |||||| |||||||||||||||| ||||||| |
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| T |
1498475 |
aaatttcattcttcacatgttttaagataacccaagttggccttgtttgtgcaatcaaaataattcctagtttgggttccatttcttttaacgttgaaaa |
1498574 |
T |
|
| Q |
109 |
gaaaagaatacatggacctggtttgacacccctacctattaacttggatttgattgactcattcgtgagcttgaacagattaaatgctattgatttgtca |
208 |
Q |
| |
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||||||| ||||||||||||| |||| ||||||||||||||| |||||||||| ||||||||||| || || || ||||||| ||||||| ||| ||| |
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| T |
1498575 |
gaaaagactacatggacctggattgaaacccctacctattaaattggatttgactgactcattcgctagtttaaaatgattaaaagctattggtttctca |
1498674 |
T |
|
| Q |
209 |
aattcttttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaacttgtcttgcaagactgttgcaactttacatttt |
308 |
Q |
| |
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|| |||||||| || ||| |||||||||||||| ||| || | | ||||| ||| |||| | | ||| | ||| |||| || ||||||| ||||| |
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| T |
1498675 |
aactcttttatctcgaatggttttcttatctcagttgcagaccatggtcgtgattttcttaaaatattggtcctccaatactggtgtaactttaaatttt |
1498774 |
T |
|
| Q |
309 |
caggaatcttttatgtt |
325 |
Q |
| |
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|||||||| |||||||| |
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| T |
1498775 |
caggaatcatttatgtt |
1498791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 373967 - 374024
Alignment:
| Q |
146 |
attaacttggatttgattgactcattcgtgagcttgaacagattaaatgctattgatt |
203 |
Q |
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||||||||| ||||||| | |||||||||||||| || |||||||||| |||||||| |
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| T |
373967 |
attaacttgaatttgatcgtttcattcgtgagcttcaaaagattaaatgttattgatt |
374024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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