View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_16 (Length: 434)
Name: NF13814_high_16
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_16 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 38 - 420
Target Start/End: Complemental strand, 4012440 - 4012058
Alignment:
| Q |
38 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatacattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
137 |
Q |
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| T |
4012440 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatgcattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
4012341 |
T |
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| Q |
138 |
aatgtattgatgttgagtttgactcacattcatgataagtagacaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
237 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012340 |
aatgtattaatgttgagtttgactcacattcatgataagtaggcaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
4012241 |
T |
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| Q |
238 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcataggctcaattgaccaaactctgtgat |
337 |
Q |
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| T |
4012240 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcataggctcaattgaccaaactctgtgat |
4012141 |
T |
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| Q |
338 |
caactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaattgatg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4012140 |
caactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaatagatg |
4012058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 38 - 415
Target Start/End: Original strand, 13976756 - 13977133
Alignment:
| Q |
38 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatacattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976756 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatgcattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
13976855 |
T |
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| Q |
138 |
aatgtattgatgttgagtttgactcacattcatgataagtagacaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
237 |
Q |
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| T |
13976856 |
aatgtatttatgttgagtttgactcacattcatgataagtaggcaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
13976955 |
T |
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| Q |
238 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcataggctcaattgaccaaactctgtgat |
337 |
Q |
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| T |
13976956 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcttaggctcaattgaccaaactctgtgat |
13977055 |
T |
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| Q |
338 |
caactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaat |
415 |
Q |
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| T |
13977056 |
caactgtttctgtctttcgtgcttttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaat |
13977133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 2086 - 2010
Alignment:
| Q |
203 |
gggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaa |
280 |
Q |
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| T |
2086 |
gggtaaacttgtaatatggatagtagtattgaatcacaa-tttgtagtttgtaaccctaaacattgcataatagaaaa |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 15853463 - 15853418
Alignment:
| Q |
356 |
gtgcgtttatttatctgtctactttagagtcgggtttgctgttcta |
401 |
Q |
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| T |
15853463 |
gtgcgtttatttatctgttcactttagaattgggtttgctgttcta |
15853418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 4489220 - 4489138
Alignment:
| Q |
317 |
caattgaccaaactctgtgatcaactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttcta |
401 |
Q |
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| T |
4489220 |
caattggccaaactctatgatcaactgttg-tgttttt-gtgcgtttatttatatgtttactttagaaccaggtttgctggtcta |
4489138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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