View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_high_22 (Length: 390)

Name: NF13814_high_22
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_high_22
NF13814_high_22
[»] scaffold0393 (1 HSPs)
scaffold0393 (1-372)||(12330-12701)
[»] chr3 (16 HSPs)
chr3 (74-372)||(2410026-2410324)
chr3 (48-175)||(52925681-52925807)
chr3 (64-172)||(3845198-3845305)
chr3 (35-112)||(35132330-35132406)
chr3 (37-113)||(41115422-41115497)
chr3 (47-173)||(39256566-39256691)
chr3 (44-113)||(33548193-33548262)
chr3 (37-113)||(43987611-43987687)
chr3 (38-106)||(48411007-48411075)
chr3 (58-109)||(54596772-54596823)
chr3 (49-115)||(38626642-38626707)
chr3 (44-88)||(7717388-7717431)
chr3 (45-113)||(35284254-35284322)
chr3 (74-113)||(21513425-21513464)
chr3 (1-83)||(4194013-4194094)
chr3 (47-104)||(1114654-1114711)
[»] chr6 (16 HSPs)
chr6 (37-173)||(29240511-29240646)
chr6 (44-175)||(6544565-6544695)
chr6 (37-113)||(33141766-33141842)
chr6 (44-109)||(5724697-5724761)
chr6 (55-157)||(34620793-34620894)
chr6 (55-157)||(34748230-34748331)
chr6 (47-112)||(2234283-2234348)
chr6 (46-110)||(26550631-26550695)
chr6 (46-113)||(33997148-33997215)
chr6 (59-113)||(26550469-26550523)
chr6 (65-174)||(33136570-33136677)
chr6 (55-107)||(2008579-2008631)
chr6 (47-107)||(13687547-13687607)
chr6 (46-86)||(24974192-24974232)
chr6 (37-113)||(26280555-26280630)
chr6 (47-91)||(32943723-32943767)
[»] chr8 (15 HSPs)
chr8 (236-366)||(30598231-30598361)
chr8 (33-113)||(40881049-40881129)
chr8 (16-113)||(11038132-11038229)
chr8 (65-173)||(41614735-41614842)
chr8 (38-113)||(5997343-5997418)
chr8 (33-170)||(32056259-32056394)
chr8 (42-173)||(35495151-35495280)
chr8 (67-113)||(29979506-29979552)
chr8 (33-113)||(8252747-8252827)
chr8 (37-113)||(13929765-13929842)
chr8 (70-111)||(36447962-36448003)
chr8 (65-112)||(38386309-38386356)
chr8 (64-113)||(34469252-34469301)
chr8 (72-113)||(38524107-38524147)
chr8 (44-113)||(39648406-39648475)
[»] chr7 (12 HSPs)
chr7 (12-113)||(45369112-45369213)
chr7 (70-168)||(48290287-48290384)
chr7 (38-113)||(21436060-21436135)
chr7 (34-113)||(45004970-45005048)
chr7 (47-93)||(40422762-40422808)
chr7 (70-113)||(12306684-12306727)
chr7 (67-113)||(29829445-29829491)
chr7 (145-176)||(33504568-33504599)
chr7 (37-111)||(7087351-7087425)
chr7 (67-113)||(12306927-12306973)
chr7 (11-52)||(3141112-3141153)
chr7 (11-88)||(5489880-5489956)
[»] chr5 (18 HSPs)
chr5 (47-167)||(10898619-10898738)
chr5 (44-175)||(29922783-29922913)
chr5 (46-114)||(29922575-29922643)
chr5 (68-113)||(38045399-38045444)
chr5 (34-113)||(33608452-33608532)
chr5 (33-86)||(7667586-7667639)
chr5 (38-110)||(10161779-10161851)
chr5 (25-113)||(13224666-13224753)
chr5 (11-113)||(1105389-1105492)
chr5 (41-111)||(11132849-11132919)
chr5 (44-86)||(42439684-42439726)
chr5 (37-113)||(12208901-12208978)
chr5 (53-115)||(9952693-9952755)
chr5 (55-109)||(27374368-27374422)
chr5 (37-94)||(7668083-7668139)
chr5 (67-111)||(11134290-11134334)
chr5 (37-113)||(35439065-35439141)
chr5 (51-83)||(37121565-37121597)
[»] chr4 (27 HSPs)
chr4 (47-113)||(25318997-25319063)
chr4 (44-176)||(29468698-29468829)
chr4 (36-112)||(2171738-2171814)
chr4 (58-173)||(2635054-2635168)
chr4 (11-165)||(8330013-8330167)
chr4 (37-93)||(18597009-18597065)
chr4 (53-113)||(33560646-33560706)
chr4 (34-109)||(9082879-9082953)
chr4 (33-107)||(2206399-2206473)
chr4 (123-173)||(47596440-47596490)
chr4 (44-81)||(11271604-11271641)
chr4 (11-88)||(26617443-26617519)
chr4 (44-108)||(54705457-54705521)
chr4 (49-112)||(471938-472001)
chr4 (46-105)||(1455633-1455692)
chr4 (37-88)||(32818430-32818480)
chr4 (44-83)||(52063117-52063156)
chr4 (37-83)||(44845726-44845772)
chr4 (11-113)||(51093208-51093309)
chr4 (72-109)||(22250180-22250217)
chr4 (44-113)||(22683813-22683882)
chr4 (98-173)||(50375572-50375644)
chr4 (50-106)||(4451413-4451469)
chr4 (37-113)||(9134560-9134635)
chr4 (38-78)||(26617193-26617233)
chr4 (45-113)||(35995178-35995246)
chr4 (67-107)||(49138851-49138891)
[»] chr2 (20 HSPs)
chr2 (34-112)||(11510904-11510982)
chr2 (38-140)||(33502909-33503010)
chr2 (37-172)||(37561599-37561732)
chr2 (37-113)||(4908739-4908815)
chr2 (38-113)||(36987172-36987247)
chr2 (52-113)||(7630366-7630427)
chr2 (48-102)||(14110638-14110692)
chr2 (33-142)||(44439172-44439283)
chr2 (44-93)||(3476496-3476545)
chr2 (36-120)||(1101946-1102030)
chr2 (33-77)||(5977166-5977210)
chr2 (44-115)||(680344-680414)
chr2 (74-113)||(39702528-39702567)
chr2 (76-169)||(9943318-9943410)
chr2 (98-175)||(42982443-42982519)
chr2 (44-88)||(2002762-2002805)
chr2 (44-88)||(7629845-7629889)
chr2 (55-87)||(33502223-33502255)
chr2 (44-88)||(36979122-36979166)
chr2 (11-99)||(40959682-40959770)
[»] chr1 (14 HSPs)
chr1 (11-109)||(48635225-48635322)
chr1 (44-113)||(32088640-32088708)
chr1 (33-115)||(51158469-51158551)
chr1 (44-171)||(6021695-6021822)
chr1 (39-113)||(15452436-15452510)
chr1 (34-168)||(41516883-41517016)
chr1 (58-109)||(646134-646185)
chr1 (74-113)||(18325187-18325226)
chr1 (121-172)||(20721057-20721108)
chr1 (45-111)||(404121-404187)
chr1 (37-87)||(5268194-5268244)
chr1 (44-86)||(5407777-5407819)
chr1 (44-94)||(52013545-52013594)
chr1 (29-113)||(12655194-12655278)
[»] scaffold0168 (1 HSPs)
scaffold0168 (44-172)||(31718-31844)


Alignment Details
Target: scaffold0393 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 12330 - 12701
Alignment:
Q  1 ttagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatcca 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12330 ttagaggcggaacgtcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatcca 12429  T
Q  101 aacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacactaatcactttcattttctcaaatttgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12430 aacatgtcaaaataattttttacacctttagaaacaattttgactcctccaaaagtgaaatcaaacataaagtaatcactttcattttctcaaatttgtg 12529  T
Q  201 tctgcgtttacatgttagtgtcctgttcgtgtctatgtttgcttcattggttgcatctaattgttggctaaaatatattaatattgttcgttttgtaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12530 tctgcgtttacatgttagtgtcctgttcgtgtctatgtttgcttcattggttgcatctaattgttggctaaaatatattaatattgttcgttttgtaaat 12629  T
Q  301 tttcatgacagtgtaaggaatcattcattcccttgattgaaactgtgatgtgcatattctccattttcttag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12630 tttcatgacagtgtaaggaatcattcattcccttgattgaaactgtgatgtgcatattctccattttcttag 12701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 74 - 372
Target Start/End: Original strand, 2410026 - 2410324
Alignment:
Q  74 aaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacact 173  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  2410026 aaaatcaattctacttgagaacatccaaacatgtcaaaataaatttttacacctttagaaacaattttgactccaccaaaagtgaaatcaaacatacact 2410125  T
Q  174 aatcactttcattttctcaaatttgtgtctgcgtttacatgttagtgtcctgttcgtgtctatgtttgcttcattggttgcatctaattgttggctaaaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2410126 aatcactttcattttctcaaatttgtgtctgcgtttacatgttagtgtcctgtttgtgtctatgtttgcttcattggttgcatctaattgttggctaaaa 2410225  T
Q  274 tatattaatattgttcgttttgtaaattttcatgacagtgtaaggaatcattcattcccttgattgaaactgtgatgtgcatattctccattttcttag 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410226 tatattaatattgttcgttttgtaaattttcatgacagtgtaaggaatcattcattcccttgattgaaactgtgatgtgcatattctccattttcttag 2410324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 52925681 - 52925807
Alignment:
Q  48 ttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcc 147  Q
    ||||||||||||||| || ||||||||||||  ||||||| ||||| || |||||||||||||||| |  || ||||||| ||||| ||||||||| |||    
T  52925681 ttcaagttagaatcagttatggaggcaaaattgattctacgtgagagcaaccaaacatgtcaaaatca-attatacacctctagaatcaattttgactcc 52925779  T
Q  148 tccaaaagtgaaatcaaacatacactaa 175  Q
    |||||||||| || | ||||||||||||    
T  52925780 tccaaaagtggaaccgaacatacactaa 52925807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 3845198 - 3845305
Alignment:
Q  64 ttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatca 163  Q
    |||| |||||| |||||||||||||||||| ||  ||||||||||||||| |  || ||||||| ||||| |||||||| || ||||||||||| || ||    
T  3845198 ttctagaggcagaatcaattctacttgagatcaaacaaacatgtcaaaatca-attctacacctctagaatcaattttggttactccaaaagtggaacca 3845296  T
Q  164 aacatacac 172  Q
    |||||||||    
T  3845297 aacatacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 35132330 - 35132406
Alignment:
Q  35 tccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 112  Q
    |||||||||||||||||||  |||||| ||||| |||  ||||||||||||| |||| ||||||||||||||||||||    
T  35132330 tccaaattgtagcttcaagcaagaatc-tttctcgagaaaaaatcaattctaattgataacatccaaacatgtcaaaa 35132406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 41115422 - 41115497
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| ||||||||||| ||||||| ||||  | |||||||||||||||||| | |||||||||||||||||||||    
T  41115422 caaattctagcttcaagt-agaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaaaat 41115497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 39256691 - 39256566
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattc 146  Q
    |||||||| |||| || || ||||| |||| ||||||||||||||||  |  ||||||||||||||| |  || ||||||| |||||  ||||||||||     
T  39256691 cttcaagtcagaaacaattttggagtcaaagtcaattctacttgagagtaatcaaacatgtcaaaatca-attctacacctctagaactaattttgattt 39256593  T
Q  147 ctccaaaagtgaaatcaaacatacact 173  Q
    ||||||||||| || |||||| |||||    
T  39256592 ctccaaaagtggaaccaaacacacact 39256566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 33548262 - 33548193
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||||  || || ||| |||||||||||||||| | | |||||||||||||||||||    
T  33548262 tagcttcaagttagaatccattttgaaggaaaaatcaattctacttaatagcatccaaacatgtcaaaat 33548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 43987611 - 43987687
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| ||||||| |||||||||   ||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  43987611 caaattctagcttccagttagaattgattctgtagacaaaatcaattgtactcaagaacatccaaacatgtcaaaat 43987687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 48411075 - 48411007
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatg 106  Q
    ||||| || |||||||||||||||| |||| |||||||||| || |||||| |||||||| ||||||||    
T  48411075 aaattttaacttcaagttagaatcaattctagaggcaaaattaaatctactcgagaacattcaaacatg 48411007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 54596823 - 54596772
Alignment:
Q  58 aatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    |||||||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  54596823 aatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgtca 54596772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 38626707 - 38626642
Alignment:
Q  49 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 115  Q
    |||||||| ||||| |||  ||||||||||||||| |||| || |||||||||||||||||||||||    
T  38626707 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataa 38626642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 7717388 - 7717431
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  7717388 tagcttcaagt-agaatcaattctggaggcaaaatcaattctact 7717431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 35284322 - 35284254
Alignment:
Q  45 agcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||| ||| ||||||||||| ||||| || |  ||||||| |||| ||||||||||    
T  35284322 agcttcaagttagaatcttttttggaggcaaaagcaattataatcaagaacatacaaatatgtcaaaat 35284254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 21513425 - 21513464
Alignment:
Q  74 aaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  21513425 aaaatcaattctacttgagaacatccaagcatgttaaaat 21513464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4194013 - 4194094
Alignment:
Q  1 ttagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaatt 83  Q
    ||||||||  |||||||||| || ||| |||  || |||||| |||||| |||||||||||| |||||||||| |||||||||    
T  4194013 ttagaggctaaaaatcaattgtagaggcaaacacttcaaattctagctt-aagttagaatcaattctggaggccaaatcaatt 4194094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 1114711 - 1114654
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaaca 104  Q
    |||||||||||||||| ||  | |||||||||||||||| || || ||||||||||||    
T  1114711 cttcaagttagaatcaatttcgaaggcaaaatcaattctgctagaaaacatccaaaca 1114654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 29240511 - 29240646
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaaca 136  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||||||||||| || |||| ||||||||||||| |  |||||||||| ||||| ||    
T  29240511 caaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatca-attttacacctctagaatca 29240609  T
Q  137 attttgattcctccaaaagtgaaatcaaacatacact 173  Q
    ||||||||||| ||||||||| || ||||||||||||    
T  29240610 attttgattcccccaaaagtggaaccaaacatacact 29240646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 6544565 - 6544695
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttga 143  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||  || | |||||||||||  |||||||||| ||||| |||||||      
T  6544565 tagcttcaagttagaatcaattctgaaggcaaaatcaattttacttgaaaacattaaagcttgtcaaaataa-attttacacctatagaatcaatttttc 6544663  T
Q  144 ttcctccaaaagtgaaatcaaacatacactaa 175  Q
     ||||||||| |||||| ||||||| ||||||    
T  6544664 ctcctccaaatgtgaaaccaaacattcactaa 6544695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 33141766 - 33141842
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| ||| ||| ||||||||||| ||||||||| |||||||||| ||||||||| || |||||||| |||||||    
T  33141766 caaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaaccaaacatatcaaaat 33141842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 5724697 - 5724761
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| ||| | |||||||||||||||    
T  5724697 tagcttcaagt-agaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtca 5724761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 34620894 - 34620793
Alignment:
Q  55 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaa 154  Q
    |||||||| ||| ||||||||||| ||||||| || | |  | |||||||||||||||| | || | |||||||||||| ||||||||  ||||||||||    
T  34620894 tagaatcaattccggaggcaaaattaattctagtttataggaaccaaacatgtcaaaatcaattct-acacctttagaatcaattttgggtcctccaaaa 34620796  T
Q  155 gtg 157  Q
    |||    
T  34620795 gtg 34620793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 34748331 - 34748230
Alignment:
Q  55 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaa 154  Q
    |||||||| ||| ||||||||||| ||||||| || | |  | |||||||||||||||| | || | |||||||||||| ||||||||  ||||||||||    
T  34748331 tagaatcaattccggaggcaaaattaattctagtttataggaaccaaacatgtcaaaatcaattct-acacctttagaatcaattttgggtcctccaaaa 34748233  T
Q  155 gtg 157  Q
    |||    
T  34748232 gtg 34748230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 2234283 - 2234348
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 112  Q
    ||||| |||||||||| ||| |||||||||||||||||||||  ||| || |||||||| ||||||    
T  2234283 cttcatgttagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaacatatcaaaa 2234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 26550695 - 26550631
Alignment:
Q  46 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 110  Q
    |||||||| || ||||| |||| ||| |||||||||||||| ||||| ||| |||||||||||||    
T  26550695 gcttcaagataaaatcaattctagagacaaaatcaattctagttgagtacaaccaaacatgtcaa 26550631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 33997215 - 33997148
Alignment:
Q  46 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||| || || |||||||||||||  | |||||||  | ||||||||||||||||    
T  33997215 gcttcaagttagaatcaattgtgaaggcaaaatcaataatgcttgagagaaaccaaacatgtcaaaat 33997148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 26550523 - 26550469
Alignment:
Q  59 atcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||| |||| ||| |||||||||||||| ||||| ||| ||||||||||||||||    
T  26550523 atcaattctagagacaaaatcaattctagttgagtacaaccaaacatgtcaaaat 26550469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 33136570 - 33136677
Alignment:
Q  65 tctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaa 164  Q
    |||||||| |||||||||| |||| |||| || |||||||||||||||| |  || ||||||| |||||  |||||||  |  ||||||||||||| |||    
T  33136570 tctggaggtaaaatcaattatactcgagagcaaccaaacatgtcaaaatca-attatacacctctagaattaattttggct-ttccaaaagtgaaaccaa 33136667  T
Q  165 acatacacta 174  Q
    | ||||||||    
T  33136668 atatacacta 33136677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 2008579 - 2008631
Alignment:
Q  55 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgt 107  Q
    |||||| | ||||||||||||||||||||||||| || | || ||||||||||    
T  2008579 tagaattaattctggaggcaaaatcaattctactagaaagcaaccaaacatgt 2008631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 13687607 - 13687547
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgt 107  Q
    |||||||||||||||| |  || ||||||| || |||||||| ||||||||| ||||||||    
T  13687607 cttcaagttagaatcaatcatgaaggcaaattctattctactcgagaacatctaaacatgt 13687547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 24974232 - 24974192
Alignment:
Q  46 gcttcaagttagaatcatttctggaggcaaaatcaattcta 86  Q
    |||||| |||||||||| || ||||||||||||||||||||    
T  24974232 gcttcatgttagaatcaattttggaggcaaaatcaattcta 24974192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 26280630 - 26280555
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| |||||||||||  |||||| |||| |||||||||||||||||||   | ||||  |||||||||||||||    
T  26280630 caaattctagcttcaagtg-gaatcaattcttgaggcaaaatcaattctaccaaaaaacaatcaaacatgtcaaaat 26280555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 32943723 - 32943767
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttga 91  Q
    |||||||||||||||  |||| ||||||||| |||||||||||||    
T  32943723 cttcaagttagaatcgattctagaggcaaaagcaattctacttga 32943767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 30598231 - 30598361
Alignment:
Q  236 tgtttgcttcattggttgcatctaattgttggctaaaatatattaatattgttcgttttgtaaattttcatgacagtgtaaggaatcattcattcccttg 335  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| | | ||  ||||| ||||||| |||||||| |||||||| || |||    
T  30598231 tgtttgcttcattggttgcagctaatagttggctaaaatataataatattgttggctctgggaatttgcatgacaatgtaaggactcattcatgccgttg 30598330  T
Q  336 attgaaactgtgatgtgcatattctccattt 366  Q
    ||| ||| |||||||||||||||||||||||    
T  30598331 attcaaattgtgatgtgcatattctccattt 30598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 40881129 - 40881049
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||    
T  40881129 gctccaagttgcagcttgaagatagaatcatttctggaggcaaaatcaattctactttagaacttgcaaacatgtcaaaat 40881049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 11038229 - 11038132
Alignment:
Q  16 caattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||  |||||||  ||||||||| |||||||||||||||||||  |||||||| |||||||| || | | ||||||||||||||||||||||||    
T  11038229 caattatggaggtaaaacctccaaattttagcttcaagttagaatcaactctggaggaaaaatcaactccattcgagaacatccaaacatgtcaaaat 11038132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 41614842 - 41614735
Alignment:
Q  65 tctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaa 164  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||| |  ||||| |||| ||||| ||||||||  |||| || || || || |||    
T  41614842 tctggaggcaaaatcaattctacttgaaaccatccaaacaagtcaaaatca-attttatacctctagaatcaattttggctcctacacaaatggaaccaa 41614744  T
Q  165 acatacact 173  Q
    |||||||||    
T  41614743 acatacact 41614735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 5997343 - 5997418
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||| || |||||||||||||||| || | ||||||||||||||| ||||  | |||||||||||||||||||||    
T  5997343 aaattctaacttcaagttagaatcacttttagaggcaaaatcaattttactcaaaaacatccaaacatgtcaaaat 5997418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 32056394 - 32056259
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttaga 132  Q
    ||||||| || |||||| |||||||||||| || |||||| |||||||||| ||||  ||| || |||||| |||||||    | || ||||| | ||||    
T  32056394 gctccaatttctagcttaaagttagaatcaattatggaggtaaaatcaattttactatagagcaaccaaacttgtcaaa--tctgttctacacatctaga 32056297  T
Q  133 aacaattttgattcctccaaaagtgaaatcaaacatac 170  Q
    | |||||||| ||||| ||||||||||| |||||||||    
T  32056296 atcaattttggttccttcaaaagtgaaaccaaacatac 32056259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 35495280 - 35495151
Alignment:
Q  42 tgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaatttt 141  Q
    ||||||||||||| ||||||| |||| |||||||||| ||||||| || |||  | | |||||||||||||| |  || ||||| | ||||| |||||||    
T  35495280 tgtagcttcaagt-agaatcaattctagaggcaaaattaattctaatttagagaaacaaaacatgtcaaaatca-attctacacttgtagaatcaatttt 35495183  T
Q  142 gattcctccaaaagtgaaatcaaacatacact 173  Q
    |  | ||||||||||| || ||||||||||||    
T  35495182 gggtgctccaaaagtggaaccaaacatacact 35495151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 29979506 - 29979552
Alignment:
Q  67 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||    
T  29979506 tggaggcaaaaccaattctacttgagaccaaccaaacatgtcaaaat 29979552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 8252827 - 8252747
Alignment:
Q  33 gctccaaattgtagcttcaag-ttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||| ||| ||||||| |  ||| || |||||||||||||||||| | |||| ||||||||||||||||    
T  8252827 gctccaaattgtagcttaaagtttagaataaactctcgaagcaaaatcaattctactt-aaaacagccaaacatgtcaaaat 8252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 13929765 - 13929842
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctgga-ggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| |||||||| |||||| ||| ||| | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  13929765 caaattctagcttcacgttagagtcaattccgtaaggcaaagacaattctactcgagaacatccaaacatgtcaaaat 13929842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 36447962 - 36448003
Alignment:
Q  70 aggcaaaatcaattctacttgagaacatccaaacatgtcaaa 111  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  36447962 aggcaaaatcaattctacccgagaacatccaaacatgtcaaa 36448003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 38386356 - 38386309
Alignment:
Q  65 tctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 112  Q
    ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  38386356 tctggaggcaaaatcaattttattcgagaacattcaaacatgtcaaaa 38386309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 34469301 - 34469252
Alignment:
Q  64 ttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||| || |||||| |||| |||||||||||||| ||||||||||||||    
T  34469301 ttctgaagtcaaaattaattatacttgagaacatcaaaacatgtcaaaat 34469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 38524107 - 38524147
Alignment:
Q  72 gcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  38524107 gcaaaatcaattttacttgagaac-tccaaacatgtcaaaat 38524147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 39648406 - 39648475
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| |||||||||||| |||| |||  ||||||||||||  |||||  ||||||||| |||||||||    
T  39648406 tagcttaaagttagaatcagttctagagagaaaatcaattctgattgagggcatccaaacttgtcaaaat 39648475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 45369213 - 45369112
Alignment:
Q  12 aaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 111  Q
    ||||||||| || ||| ||| ||||| |||| ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||| |||||    
T  45369213 aaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaa 45369114  T
Q  112 at 113  Q
    ||    
T  45369113 at 45369112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 48290384 - 48290287
Alignment:
Q  70 aggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacat 168  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| | |||  | |||| |  || ||||||||  ||||||||||||||||||||||||    
T  48290384 aggcaaaatcaattctgcttgaaaacatccaaacatgtcaaaatcaatttcca-acctatgaaatcaattttgtatcctccaaaagtgaaatcaaacat 48290287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 21436060 - 21436135
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||| ||||||||||||| ||||| |||| |||| ||||| ||||||||| ||||||||  ||||||||||||||    
T  21436060 aaattctagcttcaagttaaaatcaattctcgaggtaaaataaattctactcgagaacattaaaacatgtcaaaat 21436135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 45005048 - 45004970
Alignment:
Q  34 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| || ||||||||||| ||||||| ||||| ||||||||||||||||| | |||| || ||||||||||||||||    
T  45005048 ctccaatttttagcttcaagt-agaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtcaaaat 45004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 40422808 - 40422762
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 93  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||    
T  40422808 cttcaagttagaatcaattcttgaggcaaaatcaattctacttgaga 40422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 12306727 - 12306684
Alignment:
Q  70 aggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  12306727 aggcaaaatcaattctacttgagagcaaccaaacatgtcaaaat 12306684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 29829445 - 29829491
Alignment:
Q  67 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  29829445 tggaggcaaaatcaattctacttgagagcatccaagcatgacaaaat 29829491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 33504568 - 33504599
Alignment:
Q  145 tcctccaaaagtgaaatcaaacatacactaat 176  Q
    ||||||||||||||||||||||||||||||||    
T  33504568 tcctccaaaagtgaaatcaaacatacactaat 33504599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 7087351 - 7087425
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 111  Q
    |||||| ||||||||||||| || || ||||  |  |||||||||||||||| || ||||| |||||||||||||    
T  7087351 caaattctagcttcaagttaaaaccaattctaaaaacaaaatcaattctactcgaaaacattcaaacatgtcaaa 7087425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 12306973 - 12306927
Alignment:
Q  67 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||||||||  ||| || ||||||||||||||||    
T  12306973 tggaggcaaaatcaattctactcaagagcaaccaaacatgtcaaaat 12306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 3141112 - 3141153
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaa 52  Q
    ||||||||||||| ||||||| |||||||||| |||||||||    
T  3141112 aaaatcaattatacaggtaaaagctccaaattttagcttcaa 3141153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 5489880 - 5489956
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    |||||||||||||||   ||| ||||||| || |||| |||||| ||||||| || |||||||||||| |||||||||    
T  5489880 aaaatcaattatataatcaaaagctccaatttctagcatcaagt-agaatcaattttggaggcaaaattaattctact 5489956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 10898738 - 10898619
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattc 146  Q
    |||||||||||||||| |||| ||||||||||||||| |||| |||| || |||||||||||||||| |  ||  ||| || ||||| ||||||||||||    
T  10898738 cttcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaatta-attcgacagctctagaatcaattttgattc 10898640  T
Q  147 ctccaaaagtgaaatcaaaca 167  Q
    |||||||||||||||| ||||    
T  10898639 ctccaaaagtgaaatcgaaca 10898619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 29922913 - 29922783
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttga 143  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||| || ||||||| |||||||||||||||| |  || |||||   ||||| |||||||||    
T  29922913 tagcttcaagttaaaatcaattcttgagacaaaatcaattctgctcgagaacaaccaaacatgtcaaaatca-attctacactactagaatcaattttga 29922815  T
Q  144 ttcctccaaaagtgaaatcaaacatacactaa 175  Q
     ||||| ||||||| ||  |||||||||||||    
T  29922814 ctcctcaaaaagtggaagtaaacatacactaa 29922783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 29922643 - 29922575
Alignment:
Q  46 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaata 114  Q
    ||||||||||| ||||| |||| |||||||||||||||||||| |||||||  ||||||||||||||||    
T  29922643 gcttcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaata 29922575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 38045444 - 38045399
Alignment:
Q  68 ggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  38045444 ggaggcaaaatcaattctacttgagaacattcaaacatgtcaaaat 38045399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 33608532 - 33608452
Alignment:
Q  34 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctac-ttgagaacatccaaacatgtcaaaat 113  Q
    |||||| || ||||||||||||||||||| ||||  |||||||| ||||||||| |||||| || ||||||||||||||||    
T  33608532 ctccaacttctagcttcaagttagaatcaattctcaaggcaaaaccaattctactttgagaccaaccaaacatgtcaaaat 33608452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 7667639 - 7667586
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattcta 86  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||    
T  7667639 gctccaaattctagcttcaagttagaatcaattctgaaggcaaagtcaattcta 7667586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 10161851 - 10161779
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 110  Q
    ||||||||||| || |||||||||| |||| |||||||| ||||||||| | |||||||  ||||||||||||    
T  10161851 aaattgtagctgcatgttagaatcaattctagaggcaaagtcaattctattcgagaacaatcaaacatgtcaa 10161779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 13224666 - 13224753
Alignment:
Q  25 aggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||| |||||||||| |||||||||||| |||| | || | ||  ||||||||||| |||| | ||||||||||||||||||||||    
T  13224666 aggtaaaagctccaaattctagcttcaagtttgaatgaattatagaaacaaaatcaattatactcg-gaacatccaaacatgtcaaaat 13224753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 1105492 - 1105389
Alignment:
Q  11 aaaatcaattatataggt-aaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    ||||||||||||| | || ||| ||| |||||  || |||| ||||| ||||| || || | ||||||||||||||||||||||||| ||||| ||||||    
T  1105492 aaaatcaattatagaagtcaaaagctacaaatcataacttcgagttaaaatcaattttgaaagcaaaatcaattctacttgagaacagccaaaaatgtca 1105393  T
Q  110 aaat 113  Q
    ||||    
T  1105392 aaat 1105389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 11132849 - 11132919
Alignment:
Q  41 ttgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 111  Q
    |||||||||||||||||||||| || ||  | |||||| ||||||||| |||| || ||||||||||||||    
T  11132849 ttgtagcttcaagttagaatcaattttgacgccaaaataaattctactagagagcaaccaaacatgtcaaa 11132919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 42439684 - 42439726
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattcta 86  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  42439684 tagcttcaagttagaatcaattctggaggaaaaatcaattcta 42439726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 12208901 - 12208978
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctgga-ggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| |||||||| |||||| ||| ||| | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  12208901 caaattctagcttcacgttagagtcaattccgtaaggcaaagacaattctactcgagaacatccaaacatgtcaaaat 12208978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 9952693 - 9952755
Alignment:
Q  53 gttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 115  Q
    |||||||||| |||| ||||||||||| |||||    |||||||| |||||||||||||||||    
T  9952693 gttagaatcaattctagaggcaaaatctattctgtcagagaacattcaaacatgtcaaaataa 9952755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 27374368 - 27374422
Alignment:
Q  55 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    |||||||| ||||  ||||||||| |||||||||||| |||| ||||||||||||    
T  27374368 tagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtca 27374422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 7668139 - 7668083
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaa 94  Q
    |||||| ||||| |||||| |||||||| ||||||||||| ||||||||||| |||||    
T  7668139 caaattctagctacaagttggaatcatt-ctggaggcaaattcaattctactcgagaa 7668083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 11134334 - 11134290
Alignment:
Q  67 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 111  Q
    |||||||| ||| ||||||||| ||||| ||||||||||||||||    
T  11134334 tggaggcataattaattctactcgagaaaatccaaacatgtcaaa 11134290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 35439141 - 35439065
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| ||||||||| ||||||| |  ||| ||| | |||| ||||| ||||||| |||||||||||||| |||||    
T  35439141 caaattctagcttcaatttagaatgaaatctagagtcgaaataaattccacttgaggacatccaaacatgttaaaat 35439065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 37121597 - 37121565
Alignment:
Q  51 aagttagaatcatttctggaggcaaaatcaatt 83  Q
    ||||||||||||||||||||| |||||||||||    
T  37121597 aagttagaatcatttctggagtcaaaatcaatt 37121565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 25319063 - 25318997
Alignment:
Q  47 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||| || ||||||||||||||||    
T  25319063 cttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaat 25318997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 29468698 - 29468829
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa-aataattttttacacctttagaaacaattttg 142  Q
    |||||||||| |||||||| || |||| ||||||||  ||||||||||||||||||||||||||||| | |||  || ||||||| || || |||||||     
T  29468698 tagcttcaagatagaatcaattatggatgcaaaatcggttctacttgagaacatccaaacatgtcaatactaa--ttctacacctgtaaaatcaattttt 29468795  T
Q  143 attcctccaaaagtgaaatcaaacatacactaat 176  Q
     ||||||||| |||  ||| ||||||||||||||    
T  29468796 cttcctccaagagtcgaattaaacatacactaat 29468829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 2171814 - 2171738
Alignment:
Q  36 ccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 112  Q
    ||||||| |||||||||||| |||||| ||| || |||||| |||||| |||| |||||||||||||||||||||||    
T  2171814 ccaaattctagcttcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 2635168 - 2635054
Alignment:
Q  58 aatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtg 157  Q
    ||||| ||||||||||||||||| |||||||| | | ||  ||||||||||||||| | |||| |||| | ||||| |||||||| | |||| |||||||    
T  2635168 aatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaatttt-acacttctagaatcaattttggtccctctaaaagtg 2635070  T
Q  158 aaatcaaacatacact 173  Q
    ||| ||||||||||||    
T  2635069 aaaccaaacatacact 2635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 8330167 - 8330013
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 110  Q
    ||||||||||||| |   ||| ||||||| || ||||||||||||||||||  || |||||||| |||||||| ||||||||| || |||||||||| ||    
T  8330167 aaaatcaattatagaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacatgtaaa 8330068  T
Q  111 aa--taattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaa 165  Q
    ||  ||||| ||  ||||| ||||| ||||| ||  ||||||| |||||||| ||||    
T  8330067 aaattaattatt--cacctctagaatcaattctggctcctccagaagtgaaaccaaa 8330013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 18597065 - 18597009
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 93  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  18597065 caaattatagcttcaagttagaatcaattctggaggtaaaatcaattttacttgaga 18597009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 33560646 - 33560706
Alignment:
Q  53 gttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||| |||| |||||||||||||||||||| |||| || ||||||||||||||||    
T  33560646 gttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtcaaaat 33560706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 9082879 - 9082953
Alignment:
Q  34 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    ||||||||| ||  ||||||||||||||| ||| || |||||||||||||||| || |||||||||||||||||||    
T  9082879 ctccaaattctaagttcaagttagaatcaattcagg-ggcaaaatcaattctatttcagaacatccaaacatgtca 9082953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 2206399 - 2206473
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgt 107  Q
    ||||||| || |||||||||| |||||||| || |||||| |||||||||||| ||  ||||||| |||||||||    
T  2206399 gctccaatttttagcttcaagctagaatcaattttggaggaaaaatcaattctgctctagaacattcaaacatgt 2206473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 47596440 - 47596490
Alignment:
Q  123 cacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacact 173  Q
    |||||||| || |||||||||||||||||||||||||| || |||||||||    
T  47596440 cacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacact 47596490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 11271604 - 11271641
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaa 81  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11271604 tagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 26617519 - 26617443
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    |||||||||| ||||   ||| ||| || ||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  26617519 aaaatcaattttataatcaaaagctacagattctagcttcaagt-agaatcatttttggaggcaaaatcaattctact 26617443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 54705457 - 54705521
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtc 108  Q
    |||||||||||||| |||| || | ||||||||||||||| |||||| || || |||||||||||    
T  54705457 tagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtc 54705521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 471938 - 472001
Alignment:
Q  49 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 112  Q
    |||||||||||||| ||   |||| ||||||||||||||| || ||||| ||||||||||||||    
T  471938 tcaagttagaatcagttgcagaggtaaaatcaattctactcgacaacattcaaacatgtcaaaa 472001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 1455633 - 1455692
Alignment:
Q  46 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacat 105  Q
    ||||||||||   |||| || |||||||||||||| |||||||||| |||||||||||||    
T  1455633 gcttcaagtttatatcaattttggaggcaaaatcagttctacttgaaaacatccaaacat 1455692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 32818430 - 32818480
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    |||||| ||||||||| | ||||||| |||||||||||||||||||||||||    
T  32818430 caaattctagcttcaaat-agaatcaattctggaggcaaaatcaattctact 32818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 52063117 - 52063156
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaatt 83  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  52063117 tagcttcaagttagaatcatttctataggcaaaatcaatt 52063156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 44845772 - 44845726
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaatt 83  Q
    |||||| | ||||||||||||||||| ||||||||| ||||||||||    
T  44845772 caaattattgcttcaagttagaatcaattctggaggaaaaatcaatt 44845726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 51093309 - 51093208
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 110  Q
    |||||||||| || ||| ||| |||||||||| |||||||| |||||||||| || | |||||||||| |||| ||    ||||| || |||||||||||    
T  51093309 aaaatcaattgtagaggcaaaagctccaaattctagcttca-gttagaatcaattatagaggcaaaataaattttatgcaagaacgtcaaaacatgtcaa 51093211  T
Q  111 aat 113  Q
    |||    
T  51093210 aat 51093208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 22250217 - 22250180
Alignment:
Q  72 gcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  22250217 gcaaaatcaattctaattgagaacaaccaaacatgtca 22250180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 22683882 - 22683813
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||| ||| | |||||||||||||||||||| ||||  | ||||  | |||||||||||||    
T  22683882 tagcttcaagttataattaattctggaggcaaaatcaattttactcaaaaacaaaccaacatgtcaaaat 22683813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 50375572 - 50375644
Alignment:
Q  98 ccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacact 173  Q
    |||||||||||||||||   || ||||||| || || ||||||||| || |||||||||  |||||||||||||||    
T  50375572 ccaaacatgtcaaaata---ttatacacctctaaaatcaattttgactcatccaaaagtagaatcaaacatacact 50375644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 4451469 - 4451413
Alignment:
Q  50 caagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatg 106  Q
    ||||||||||| ||||| |||| ||||| ||| |||||| ||||| |||||||||||    
T  4451469 caagttagaattatttccggagtcaaaagcaagtctactcgagaatatccaaacatg 4451413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 9134635 - 9134560
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| ||||||||||| || |||| ||||||| | ||||||||||| ||| || |||| | ||||||||||||||    
T  9134635 caaattttagcttcaagt-aggatcaattctggaagtaaaatcaattccactcgataacaactaaacatgtcaaaat 9134560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 26617233 - 26617193
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaat 78  Q
    ||||||||| ||||||||||||||| || ||||||||||||    
T  26617233 aaattgtagtttcaagttagaatcaattttggaggcaaaat 26617193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 35995246 - 35995178
Alignment:
Q  45 agcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||||||||||||||| ||||| ||| |||||||||| |||| || | |||||  | ||||||||||    
T  35995246 agcttcaagttagaatcagttctgaaggtaaaatcaattatactagaaatcatcctcatatgtcaaaat 35995178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 49138851 - 49138891
Alignment:
Q  67 tggaggcaaaatcaattctacttgagaacatccaaacatgt 107  Q
    ||||||||||||||||| ||||||| |||| ||||||||||    
T  49138851 tggaggcaaaatcaattttacttgaaaacaaccaaacatgt 49138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 11510982 - 11510904
Alignment:
Q  34 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 112  Q
    ||||||||| |||||||||| ||||||||  | |||||||||||||||||||||| || ||||||||||||| ||||||    
T  11510982 ctccaaattctagcttcaagatagaatcaaatatggaggcaaaatcaattctactcgaaaacatccaaacatatcaaaa 11510904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 33502909 - 33503010
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaa 137  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||| || |||| |||| || |||||||||||||||| |  ||||||||||| |||| |||    
T  33502909 aaattctagcttcaagttagaatcaattctggatgcaaaatcagttttactcgagagcaaccaaacatgtcaaaatca-attttacaccttcagaatcaa 33503007  T
Q  138 ttt 140  Q
    |||    
T  33503008 ttt 33503010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 37561732 - 37561599
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaaca 136  Q
    ||||| |||| ||||||||||||||| || | ||||||||||||| |||||||||| | || ||||||||||||||| |  |||||||||| ||||| ||    
T  37561732 caaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatca-attttacacctctagaatca 37561635  T
Q  137 attttgattcctccaaaagtgaaatcaaacatacac 172  Q
    |||  |  || ||||||| ||||| |||||||||||    
T  37561634 attccgcctcatccaaaattgaaaccaaacatacac 37561599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 4908815 - 4908739
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||||| |||||| |||||||||| | ||| | ||||||||||||||||||| || ||||| |||||||||||||||    
T  4908815 caaattttagctttaagttagaataaattcggaaggcaaaatcaattctactcgaaaacatacaaacatgtcaaaat 4908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 36987172 - 36987247
Alignment:
Q  38 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||| || |||||||||||||||||||||||| |||||||||||| ||||  | |  ||||||||||||||||||    
T  36987172 aaattctaacttcaagttagaatcatttctggaagcaaaatcaattatactcaaaagaatccaaacatgtcaaaat 36987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 7630427 - 7630366
Alignment:
Q  52 agttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||  | |||||||||||||||||||||||||| | || ||||||||||||||||    
T  7630427 agttagaatctatcctggaggcaaaatcaattctacttgaaagcaaccaaacatgtcaaaat 7630366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 14110692 - 14110638
Alignment:
Q  48 ttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaa 102  Q
    ||||||||||||||| ||||  ||||||| ||||||| |||||||||||||||||    
T  14110692 ttcaagttagaatcaattctaaaggcaaattcaattcaacttgagaacatccaaa 14110638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 44439283 - 44439172
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatca---tttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacaccttt 129  Q
    |||||||||| |||||||||||||||||||    |||| ||||||||||||||| | || |||  || |||||||||||||||| |  ||  ||||||||    
T  44439283 gctccaaattttagcttcaagttagaatcaattcttctagaggcaaaatcaattttcctggagggcaaccaaacatgtcaaaatta-attcaacaccttt 44439185  T
Q  130 agaaacaattttg 142  Q
    |||| ||||||||    
T  44439184 agaatcaattttg 44439172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 3476496 - 3476545
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 93  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| ||||    
T  3476496 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgaga 3476545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 1102030 - 1101946
Alignment:
Q  36 ccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttt 120  Q
    ||||||| ||| || ||||||||||||  || ||||||||||||||||||||| |||  || ||||| || ||||||||| ||||    
T  1102030 ccaaattctagttttaagttagaatcaaatcaggaggcaaaatcaattctactcgagtgcaaccaaaaatttcaaaataaatttt 1101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 5977210 - 5977166
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaa 77  Q
    |||||||||| ||||||||||||||||||| || |||||||||||    
T  5977210 gctccaaattttagcttcaagttagaatcaattatggaggcaaaa 5977166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 680344 - 680414
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 115  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || | || | ||||||||||||||||    
T  680344 tagcttcaagt-agaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgtcaaaataa 680414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 39702528 - 39702567
Alignment:
Q  74 aaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  39702528 aaaatcaattctactcgagaacatacaaacatgtcaaaat 39702567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 9943410 - 9943318
Alignment:
Q  76 aatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacata 169  Q
    |||||||||||  ||||| || |||||||||| ||||| | |||| ||||||| |||| |||||||| || ||||||| ||| || ||||||||    
T  9943410 aatcaattctaagtgagagcaaccaaacatgttaaaatcaatttt-acaccttcagaatcaattttggttgctccaaatgtggaaccaaacata 9943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 42982519 - 42982443
Alignment:
Q  98 ccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacactaa 175  Q
    |||||||||||||||| | || | |||  |||||||  ||||| |||||||||||||||| || ||||||||||||||    
T  42982519 ccaaacatgtcaaaatcagttct-acatgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaa 42982443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 2002762 - 2002805
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||    
T  2002762 tagcttcaagt-agaatcaggtctggaggcaaaatcaattctact 2002805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 7629889 - 7629845
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    ||||||||||||||||||| ||||||||| ||| | |||||||||    
T  7629889 tagcttcaagttagaatcaattctggaggaaaagtgaattctact 7629845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 33502255 - 33502223
Alignment:
Q  55 tagaatcatttctggaggcaaaatcaattctac 87  Q
    |||||||| ||||||||||||||||||||||||    
T  33502255 tagaatcaattctggaggcaaaatcaattctac 33502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 36979166 - 36979122
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 88  Q
    |||||||||||||| |||| ||||| ||||||||| |||||||||    
T  36979166 tagcttcaagttagtatcaattctgaaggcaaaataaattctact 36979122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 40959682 - 40959770
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatcc 99  Q
    ||||||||||||| ||  ||| |||||||| |||||| |||||||||||| | || | ||| | | |||||||||||  ||||||||||    
T  40959682 aaaatcaattatagagacaaaagctccaaactgtagcatcaagttagaattaattttagagactacatcaattctacaagagaacatcc 40959770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 48635225 - 48635322
Alignment:
Q  11 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    ||||||||||||| ||  ||| ||| |||||| |||  | |||||||||||| || || |||||||| |||||||||||||||||||||||||||||||    
T  48635225 aaaatcaattatagagacaaaagcttcaaattctaggctgaagttagaatcaattatg-aggcaaaaccaattctacttgagaacatccaaacatgtca 48635322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 32088640 - 32088708
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||||||| || || ||| |||||||||||||||||||| || ||||||||||||||||    
T  32088640 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaat 32088708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 51158469 - 51158551
Alignment:
Q  33 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 115  Q
    |||||||||| |  |||||||||| ||| | | |||||||||||||||||||||   ||||||||||||||||| ||||||||    
T  51158469 gctccaaattctttcttcaagttaaaataaatcctggaggcaaaatcaattctatccgagaacatccaaacatgccaaaataa 51158551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 6021822 - 6021695
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat-aatt-ttttacacctttagaaacaatttt 141  Q
    ||||||||||| ||||||  |||| ||||||||||||||||||||||| | ||  ||||| ||||||||| |||| || ||||||| ||||| ||| |||    
T  6021822 tagcttcaagt-agaatcgattctagaggcaaaatcaattctacttgaaatcaatcaaacttgtcaaaatcaattattctacacctctagaatcaa-ttt 6021725  T
Q  142 gattcctccaaaagtgaaatcaaacataca 171  Q
     | ||||||||||||| || ||||||||||    
T  6021724 aactcctccaaaagtggaaccaaacataca 6021695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 15452510 - 15452436
Alignment:
Q  39 aattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    |||| ||| ||||| |||||| || |||| ||  |||||||||||||||| ||||||||||||| ||||||||||    
T  15452510 aattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaat 15452436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 41517016 - 41516883
Alignment:
Q  34 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaa 133  Q
    ||||||||| || |||||||||||||||| || |  | ||||||||||||||||| || ||||| | || |||||| ||| |  || ||||||| |||||    
T  41517016 ctccaaattctaacttcaagttagaatcaattttaaacgcaaaatcaattctactcgaaaacattccaagatgtcataatca-attctacacctctagaa 41516918  T
Q  134 acaattttgattcctccaaaagtgaaatcaaacat 168  Q
       ||||||| ||||||||||||| || |||||||    
T  41516917 tggattttgactcctccaaaagtggaaccaaacat 41516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 646185 - 646134
Alignment:
Q  58 aatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 109  Q
    ||||| |||||||||||||||||||||||||  | |||| ||||||||||||    
T  646185 aatcaattctggaggcaaaatcaattctactcaaaaacaaccaaacatgtca 646134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 18325187 - 18325226
Alignment:
Q  74 aaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  18325187 aaaatcaattctactcgagaaaatccaaacatgtcaaaat 18325226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 20721057 - 20721108
Alignment:
Q  121 tacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacac 172  Q
    ||||||| ||||| ||||||||||||||||||||||| ||  ||||||||||    
T  20721057 tacacctctagaatcaattttgattcctccaaaagtggaacaaaacatacac 20721108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 404121 - 404187
Alignment:
Q  45 agcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 111  Q
    |||||||||||| ||||| |||| |||| ||||||||||| |||  | |||||| ||||||||||||    
T  404121 agcttcaagttaaaatcaattcttgaggtaaaatcaattcaactaaaaaacatctaaacatgtcaaa 404187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 5268244 - 5268194
Alignment:
Q  37 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctac 87  Q
    |||||| ||||||| ||||||||||| || |||||||||||| ||||||||    
T  5268244 caaattctagcttcgagttagaatcaattttggaggcaaaattaattctac 5268194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 5407819 - 5407777
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattcta 86  Q
    ||||||||||||||||| || |||| |||||||||||||||||    
T  5407819 tagcttcaagttagaattatctctgcaggcaaaatcaattcta 5407777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 52013545 - 52013594
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaa 94  Q
    ||||||||||||||||||| || ||||||||||||||||| |||| |||||    
T  52013545 tagcttcaagttagaatcaatt-tggaggcaaaatcaattttactggagaa 52013594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 12655278 - 12655194
Alignment:
Q  29 aaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 113  Q
    ||||||| |||||| ||||||||||||||||| | |||| |||||||| || | ||||||  | | || | ||||||||||||||    
T  12655278 aaatgctacaaattctagcttcaagttagaattaattctagaggcaaagtcgaatctactccaaagcaactaaacatgtcaaaat 12655194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 31844 - 31718
Alignment:
Q  44 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttga 143  Q
    ||||||||||| | ||||| || |||||||| |||||||| |||| || |||| |||||||||||| ||| |  || ||||||| ||||| ||||||||     
T  31844 tagcttcaagt-ataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatca-attctacacctctagaatcaattttgg 31747  T
Q  144 ttcctccaaaagtgaaatcaaacatacac 172  Q
    |  ||| | ||||| || |||||||||||    
T  31746 tcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University