View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_24 (Length: 382)
Name: NF13814_high_24
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 7130877 - 7130520
Alignment:
| Q |
16 |
aaaattaatcccaacaacgatatttaatatacttacaaaaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggatt |
115 |
Q |
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| T |
7130877 |
aaaattaatcccaacaacgatatttaatatacttacaaaaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggatt |
7130778 |
T |
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| Q |
116 |
ctcaaaagcacatcaacaagatcttcctgctctacctcatcactactaattttccctacttttgctcttctttgcttctcttgatgctttctaacaatta |
215 |
Q |
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| T |
7130777 |
ctcaaaagcacatcaacaagatcttcttgctctacctcatcactactaactttcccttcttttgctcttctttgcttctcttgatgctttctaacaatta |
7130678 |
T |
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| Q |
216 |
tttccaatattttatcagcttttttgtgcattttctccactttggattttgtgccagttagcacttgtattatagatttcattgaaggaaacaaatcagc |
315 |
Q |
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| T |
7130677 |
tttccaatattttatcagcttttttgtgcattttcaacactttggattttgtgccagttagcatttgtattatagatttcattgaaggaaacaaatcagc |
7130578 |
T |
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| Q |
316 |
aggttcaagtcctccaacagattctattgcttttctaatcacactcacaaattcatct |
373 |
Q |
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| T |
7130577 |
aggttcaagtcctccaacagattctattgcttttctaatcacactcacaaattcatct |
7130520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 7141193 - 7141104
Alignment:
| Q |
54 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttcct |
143 |
Q |
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| T |
7141193 |
aaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatccacaagatcttcct |
7141104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 7153024 - 7152937
Alignment:
| Q |
54 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
141 |
Q |
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|||||||||||||||||||| | ||||||||| ||| |||||| | |||||| ||||| || |||||| ||||| | ||||||||| |
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| T |
7153024 |
aaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatctagaagatcttc |
7152937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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