View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_25 (Length: 346)
Name: NF13814_high_25
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 53866234 - 53865920
Alignment:
| Q |
13 |
aatataacggacccaaaggacaattgacagaatattgtgcaaaggtgaaaacatcagcgaccttcaataagaaaagtaaagtgaaatacttttttaataa |
112 |
Q |
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| T |
53866234 |
aatataacggacccaaaggacaattgacagaatattgtgcaaaggtgaaaacatcagcgaccttcaataagaaaagtaaagtgaaatacttttttaataa |
53866135 |
T |
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| Q |
113 |
taatatttgaaaacaatgaagttgttgattgtaataatatgaaggatatatatatacccctatagttgtatatgctgaacaacgaatagtgatttcaacg |
212 |
Q |
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| T |
53866134 |
taatatttgaaaacaatgaagttgttgattgtaataatatgaaggatatatatatacccccatagttgtatatgctgaacaacgaatagtgatttcaacg |
53866035 |
T |
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| Q |
213 |
tcttctaagctctcctcttgattatcatgttgtaagtcaagcttgcaggcagcgactataaccggaacgtttacctgttcattaagtccatataagtata |
312 |
Q |
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| T |
53866034 |
tcttctaagctctcctcttgattatcatgttgtaagtcaagcttgcaggcagcgactataaccggaacgtttacctgttcattaagtccatataagtata |
53865935 |
T |
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| Q |
313 |
taactatatcatgca |
327 |
Q |
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| T |
53865934 |
taactatatcatgca |
53865920 |
T |
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