View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_high_29 (Length: 335)

Name: NF13814_high_29
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_high_29
NF13814_high_29
[»] chr6 (6 HSPs)
chr6 (19-320)||(213241-213542)
chr6 (36-121)||(7041341-7041426)
chr6 (34-121)||(7012644-7012731)
chr6 (34-121)||(7025580-7025667)
chr6 (75-121)||(7046672-7046718)
chr6 (149-210)||(7046586-7046647)
[»] chr3 (10 HSPs)
chr3 (33-160)||(9343639-9343766)
chr3 (33-196)||(9448072-9448235)
chr3 (79-195)||(9495052-9495171)
chr3 (69-162)||(9432678-9432772)
chr3 (44-133)||(9617668-9617757)
chr3 (33-120)||(9329670-9329757)
chr3 (131-169)||(9416342-9416380)
chr3 (131-169)||(9442087-9442125)
chr3 (44-133)||(9626680-9626769)
chr3 (33-137)||(41985448-41985552)
[»] chr1 (7 HSPs)
chr1 (79-190)||(8814591-8814705)
chr1 (127-204)||(234984-235061)
chr1 (127-197)||(246645-246715)
chr1 (92-162)||(4428420-4428490)
chr1 (128-197)||(231352-231421)
chr1 (127-191)||(251660-251724)
chr1 (92-162)||(4439649-4439719)
[»] chr7 (4 HSPs)
chr7 (92-166)||(3686614-3686688)
chr7 (33-179)||(450315-450459)
chr7 (126-166)||(3679865-3679905)
chr7 (69-109)||(3695539-3695579)
[»] chr2 (1 HSPs)
chr2 (33-157)||(20694472-20694596)
[»] chr5 (2 HSPs)
chr5 (107-162)||(33541413-33541468)
chr5 (95-137)||(18570467-18570509)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 213241 - 213542
Alignment:
19 tggacaaaatacacgtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
213241 tggacaaaatacacgtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtgg 213340  T
119 atcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgcttaatttatgcttagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
213341 atcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgcttaatttatgcttagt 213440  T
219 ttggaataaacatttcagttagtacttattaacaaaagaaaaatggaaatgcttttacattaactattttcttatctaatttttcaaaagctcttcattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||    
213441 ttggaataaacatttcagttagtacttattaacaaaagaaaaatggaaatgttgttacattaactatgtgcttatctaatttttcaaaagctcttcattt 213540  T
319 ac 320  Q
    ||    
213541 ac 213542  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 7041426 - 7041341
Alignment:
36 ttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc 121  Q
    ||||| |||||||||||||||| | |||  || | ||| ||| |||||||| ||||||||||||||||||||||||  ||||||||    
7041426 ttttggacttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 7041341  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 7012731 - 7012644
Alignment:
34 tgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc 121  Q
    ||||||| |||||||||||||||||| |||   | ||||| ||| ||| |||| |||||||||||| ||||||||| | |||||||||    
7012731 tgttttggacttggatcaaggtcgacattcgcttttgtctgattgtcccgaatattccaacttgttatggccacctgcagagtggatc 7012644  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 7025667 - 7025580
Alignment:
34 tgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc 121  Q
    ||||||| ||||||||| |||||| | |||   | ||||  ||| |||||||| |||||||||||||||||||||||| |||||||||    
7025667 tgttttggacttggatctaggtcggcattcgcttttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatc 7025580  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 7046718 - 7046672
Alignment:
75 attctcctgaattttccaacttgttctggccacctcccgagtggatc 121  Q
    |||||||||||| |||||||||||| |||||||||||  ||||||||    
7046718 attctcctgaatattccaacttgttttggccacctccaaagtggatc 7046672  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 7046647 - 7046586
Alignment:
149 tgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgcttaattta 210  Q
    ||||||||||||||||||||| ||| |||| || |||||||| |||||   |||||||||||    
7046647 tgttatcttgcattgaaaggtttctaatgtgatagtgatatagctttactatgcttaattta 7046586  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 9343766 - 9343639
Alignment:
33 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 132  Q
    ||||||| ||| ||||||||||||| |||||| || ||||| ||| |||||||| ||  | |||||||||||||||||| ||||||||||||||||| ||    
9343766 gtgtttttcacatggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccggagtggatcgtcaaaagttg 9343667  T
133 aattcgtaagtgagtatgttatcttgca 160  Q
      || |||| | |||| |||||||||||    
9343666 cctttgtaactaagtaagttatcttgca 9343639  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 9448235 - 9448072
Alignment:
33 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 132  Q
    |||||||  ||||||||||||| |  |||||| || ||||| |||  |||||| |||  |||||||||||||||||||| |||||||||||| ||||  |    
9448235 gtgttttttacttggatcaaggcctgctttcacctttgtctgattgccctgaaattttgaacttgttctggccacctccagagtggatcgtccaaagtag 9448136  T
133 aattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatcttta 196  Q
      ||||||| |||||||||| |||| |||||||| || ||| || | ||||| |||| ||||||    
9448135 ccttcgtaattgagtatgttgtcttacattgaaacgtttctaatttgattgtaatatttcttta 9448072  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 9495052 - 9495171
Alignment:
79 tcctgaattttccaacttgttctggccacctcccgagtggatcgtcaa---aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctca 175  Q
    |||||||| ||  |||||||||||||||||||| || |||||||||||   ||||||||| | ||| |||||||||||||||||||| |||| | | | |    
9495052 tcctgaatattttaacttgttctggccacctccggattggatcgtcaaaagaagctgaatgcataactgagtatgttatcttgcattaaaagctttttaa 9495151  T
176 tgttattgtgatatatcttt 195  Q
    ||| ||||||||||| ||||    
9495152 tgtgattgtgatatagcttt 9495171  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 9432772 - 9432678
Alignment:
69 tgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctgaattc-gtaagtgagtatgttatcttgcatt 162  Q
    ||||| ||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||   | ||  ||| ||||||||||||||||||||    
9432772 tgtctgattatcctgaatattacaacttgttctggccacctccggagtggatcgtcaaaagccacagtcattaactgagtatgttatcttgcatt 9432678  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 9617668 - 9617757
Alignment:
44 ttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctga 133  Q
    |||||||||||||| ||||| ||| |||||  || ||||||||  | ||||||||||||||||||||| || |||||| |||||||||||    
9617668 ttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggccacctccggattggatcttcaaaagctga 9617757  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 9329757 - 9329670
Alignment:
33 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggat 120  Q
    ||||||| ||||||||||||||||    |||| || ||||  ||| |||||||| || ||| ||||||||||||||||| ||||||||    
9329757 gtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcctgaatatttcaagttgttctggccacctccagagtggat 9329670  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 9416380 - 9416342
Alignment:
131 tgaattcgtaagtgagtatgttatcttgcattgaaaggt 169  Q
    ||||||||||| |||||||| ||||||||||||||||||    
9416380 tgaattcgtaaatgagtatgctatcttgcattgaaaggt 9416342  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 9442087 - 9442125
Alignment:
131 tgaattcgtaagtgagtatgttatcttgcattgaaaggt 169  Q
    |||| |||||| |||||||||||||||||||||||||||    
9442087 tgaaatcgtaaatgagtatgttatcttgcattgaaaggt 9442125  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 9626680 - 9626769
Alignment:
44 ttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctga 133  Q
    ||||||||||||||  |||| ||||| ||| ||| || ||||| || ||||||||| | ||||||||| || |||||| |||| ||||||    
9626680 ttggatcaaggtcgggtttcgtctgtatctcattatcatgaatatttcaacttgttttcgccacctccggattggatcctcaagagctga 9626769  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 41985552 - 41985448
Alignment:
33 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 132  Q
    ||||||| |||||||||||| || |  ||||  || ||||| ||| |||||| |  |||| || ||| ||||||||||| || |||||||||||||||||    
41985552 gtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcgtcaaaagctg 41985453  T
133 aattc 137  Q
     ||||    
41985452 cattc 41985448  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 8814591 - 8814705
Alignment:
79 tcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaag---ctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctca 175  Q
    |||||||| ||| || |||||||||||||||||  ||||||| ||| ||||   |||||| | |||  | |||||||||||||||||||||||| ||| |    
8814591 tcctgaatattctaaattgttctggccacctccaaagtggatggtctaaagaagctgaatgcataacagtgtatgttatcttgcattgaaaggtttctaa 8814690  T
176 tgttattgtgatata 190  Q
    ||| |||||||||||    
8814691 tgtgattgtgatata 8814705  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 235061 - 234984
Alignment:
127 aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgctt 204  Q
    |||||||||| ||||  |||||||||||||||||||||||||| ||| || | |||||||| || ||||||| |||||    
235061 aagctgaattagtaacagagtatgttatcttgcattgaaaggtttctaatctgattgtgatgtagctttatcgtgctt 234984  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 246715 - 246645
Alignment:
127 aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttat 197  Q
    |||||||||| ||||  |||||| ||||||||||||||||||| ||| |||| ||| ||||||| ||||||    
246715 aagctgaattagtaacagagtatattatcttgcattgaaaggtttctaatgtgattttgatatagctttat 246645  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 4428490 - 4428420
Alignment:
92 aacttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcatt 162  Q
    |||||||||||||||||| | |||||||||| | || ||||  ||| ||| ||||||||||||||||||||    
4428490 aacttgttctggccacctacagagtggatcggcgaatgctgcgttcctaaatgagtatgttatcttgcatt 4428420  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 231421 - 231352
Alignment:
128 agctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttat 197  Q
    ||||||||| ||||   ||||||||||||||||||||||||| ||| |||| | ||||||||| ||||||    
231421 agctgaattagtaacaaagtatgttatcttgcattgaaaggtttctaatgtaactgtgatatagctttat 231352  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 251660 - 251724
Alignment:
127 aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatat 191  Q
    |||||||||| ||||   ||||||||||||||||||||||||| ||| |||| ||||| ||||||    
251660 aagctgaattagtaacaaagtatgttatcttgcattgaaaggtttctaatgtcattgtcatatat 251724  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 4439719 - 4439649
Alignment:
92 aacttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcatt 162  Q
    |||||||||||||||||| | |||||||||| | || | ||  ||| ||| ||||||||||||||||||||    
4439719 aacttgttctggccacctgcagagtggatcggcgaatgttgcgttcctaaatgagtatgttatcttgcatt 4439649  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 3686614 - 3686688
Alignment:
92 aacttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaa 166  Q
    |||||||| ||||||||||| || |  |||||||||| |||||||| ||| ||||| ||||||||||||||||||    
3686614 aacttgttttggccacctcctgattcaatcgtcaaaaactgaattcataattgagtttgttatcttgcattgaaa 3686688  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 450315 - 450459
Alignment:
33 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 132  Q
    ||||||| |||||||||||||||||  ||||| |  ||||| ||| ||| || | || ||| ||||||||||||||||| || ||||||      || ||    
450315 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc--actgagttg 450412  T
133 aattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgtt 179  Q
    ||||| |||  ||||||||| |||||||||||||||| ||| |||||    
450413 aattcataacagagtatgttctcttgcattgaaaggtttctaatgtt 450459  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 3679905 - 3679865
Alignment:
126 aaagctgaattcgtaagtgagtatgttatcttgcattgaaa 166  Q
    |||||||||||||| | ||||||||||||| ||||||||||    
3679905 aaagctgaattcgtcactgagtatgttatcatgcattgaaa 3679865  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 3695579 - 3695539
Alignment:
69 tgtctaattctcctgaattttccaacttgttctggccacct 109  Q
    ||||||||  |||||||| ||||||||||||||||||||||    
3695579 tgtctaatgatcctgaatattccaacttgttctggccacct 3695539  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 20694472 - 20694596
Alignment:
33 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 132  Q
    ||||||| || |||||||||| ||| |||||| || ||||  ||| |||||||| ||  |||||||||||||| ||||| ||||||||||| |||  |||    
20694472 gtgttttccatttggatcaagatcggctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatcgtaaaatcctg 20694571  T
133 aattcgtaagtgagtatgttatctt 157  Q
     |||  ||  |||||||||||||||    
20694572 catttctagttgagtatgttatctt 20694596  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 33541468 - 33541413
Alignment:
107 cctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcatt 162  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||    
33541468 cctccagagtggatcgtcaaaagctgcattcgtaactgagtatgttaacctgcatt 33541413  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 18570509 - 18570467
Alignment:
95 ttgttctggccacctcccgagtggatcgtcaaaagctgaattc 137  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
18570509 ttgttctggccacctcccgagtggatcgtcaatagctaaattc 18570467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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