View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_31 (Length: 311)
Name: NF13814_high_31
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_31 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 8020 - 8308
Alignment:
| Q |
12 |
atgaatattccacactatatgccaattcaattaatt----gttcaaatcatattaattaggataaataataactgcaaaagatttcaataaagtgtgacg |
107 |
Q |
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| T |
8020 |
atgaatattccacactatatgccaattcaattaattaattgttcaaatcatattaattaggataaataataactgcacaagatttcaataaagtgtgacg |
8119 |
T |
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| Q |
108 |
ttgagatatatactcattagggtatttgagttttgagaagnnnnnnnnnnnnnn-tgcgtccgtttcaaagattatcattgtctagttttttattattat |
206 |
Q |
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| T |
8120 |
ttgagatatatactcattagggtctttgagttttgagaagaaaaaaaataaaaaatgcgtccgtttcaaagattatcattttctagttttttattattat |
8219 |
T |
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| Q |
207 |
cactatgtttggttttgaatttggtgtttgtgtgtaatggaggttcgacaagtatttttgttaggaaggttgagaagagcattgatatg |
295 |
Q |
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| T |
8220 |
cactaggtttggttttgaatttggtgtttgtgtgtaatggaagttccacaagtatttttgttaggaaggttgagaagagcattgatatg |
8308 |
T |
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 13636537 - 13636636
Alignment:
| Q |
196 |
tttattattatcactatgtttggttttgaatttggtgtttgtgtgtaatggaggttcgacaagtatttttgttaggaaggttgagaagagcattgatatg |
295 |
Q |
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| T |
13636537 |
tttattattagctttatgtttggttttgaatttggtgtttgtgtgtaatggaggcagaactagtacttttgttaggaaagttgagaagaccattgatatg |
13636636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 50965603 - 50965531
Alignment:
| Q |
177 |
gattatcattgtctagttttttattattatcactatgtttggttttgaatttggtgtttgtgtgtaatggagg |
249 |
Q |
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| T |
50965603 |
gattatcatttcctaattttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggagg |
50965531 |
T |
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