View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_42 (Length: 250)
Name: NF13814_high_42
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 36329222 - 36329022
Alignment:
| Q |
37 |
ttttgttgaaaaagatgaaattcttggtcttaaattacctagtaccagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctc |
136 |
Q |
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| T |
36329222 |
ttttgttgaaaaagatgaaattcttggtcttaaattacctagtacgagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctc |
36329123 |
T |
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| Q |
137 |
caatcaacttttccatcaactaactcttcttcctgcatgcatgcatggacatacataatattaataa----ttaagtagcttgtaagaaattaacactag |
232 |
Q |
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| T |
36329122 |
caatcaacttttccatcaactaactcttcttcctgcatgcatgcatggacatacataatattaataattaattaagtagcttgtaagaaattaacactag |
36329023 |
T |
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| Q |
233 |
t |
233 |
Q |
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| T |
36329022 |
t |
36329022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 36322328 - 36322173
Alignment:
| Q |
67 |
taaattacctagtaccagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctccaatcaacttttccatcaactaactcttct |
166 |
Q |
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|||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
36322328 |
taaagtacctagtatgaccaaagaaactttcattcccccatgtttatgtctcacagctcttcttcctttccaatcaacttttccatcaactagctcttct |
36322229 |
T |
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| Q |
167 |
tcctgcatgcatgcatggacatacataatattaataattaagtagcttgtaagaaattaa |
226 |
Q |
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||||| |||| ||||||||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
36322228 |
tcctg----catgtatggacatacataatattaatgattaagtagcatgtaaaaaattaa |
36322173 |
T |
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