View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_47 (Length: 240)
Name: NF13814_high_47
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43568100 - 43568329
Alignment:
| Q |
1 |
ctatgttctggtttcatctcaatcaaaatcgttccaaccctttctccaacttcaacatttctgtgaatcctgcaggctcctagcaatgctcc----ccat |
96 |
Q |
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| T |
43568100 |
ctatgttctggtttcatctcaatcaaaatcgttccaaccctttctccaacttcaacatttctgtgaatcctgcaggctcctagcaatgctccctccccat |
43568199 |
T |
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| Q |
97 |
actggagcatttggttttataggcatttcaagaataaaattctccgcctcttccaactttcctgcccttccaagaagatcaaccatacatccataatgtt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43568200 |
actggagcatttggttttataggcatttcaagaataaaattctccgcctcttccaactttcctgcccttccaagaagatcaaccatacatccataatgtt |
43568299 |
T |
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| Q |
197 |
ccaatctcggctctaacctataatcccttt |
226 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43568300 |
ccaatctcggctctaacctataatcccttt |
43568329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 28405603 - 28405564
Alignment:
| Q |
160 |
gcccttccaagaagatcaaccatacatccataatgttcca |
199 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| |
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| T |
28405603 |
gcccttccaagaaggtcaaccatacaaccataatgttcca |
28405564 |
T |
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