View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13814_high_5 (Length: 643)
Name: NF13814_high_5
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 39 - 627
Target Start/End: Original strand, 31056167 - 31056755
Alignment:
| Q |
39 |
tattatcctgtcaaaagaaaaaagtaatcacatattcacacataccctacccactatgaccnnnnnnntattcgcacatatagccacgtgattattgttt |
138 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
31056167 |
tattatccagtcaaaagaaaaaagtaatcacatattcacacataccctacccactatgaccaaaaaaatattcacacatatagccacgtgattattgttt |
31056266 |
T |
|
| Q |
139 |
gtttactttaagctcaaacttatatatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaaataaatccagctacttgaatgatggt |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31056267 |
gtttgctttaagctcaaacttatatatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaaataaatccagctacttgaatgatggt |
31056366 |
T |
|
| Q |
239 |
actacccacgttgatcatgattctgtgtgtccttccaacactctctgttgctgaagatagtgaagcaaaattagcactattgaaatggaaagatagcttt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31056367 |
actacccacgttgatcatgattctgtgtgtccttccaacactctctgttgctgaagatagtgaagcaaaattagcactattgaaatggaaagatagcttt |
31056466 |
T |
|
| Q |
339 |
gacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagtgtgacaaatccaatttcattt |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31056467 |
gacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagtgtgacaaatccaatttcattt |
31056566 |
T |
|
| Q |
439 |
ctaccataggtcttgcaaatttaggattaaaaggtacacttcactctctcaccttctcttcatttcccaacctccttatcatagacatcagtaacaactc |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
31056567 |
ctaccataggtcttgcaaatttaggattaaaaggtacacttcactctctcaccttctcttcatttcccaacctccttatgatagacatccgtaacaactc |
31056666 |
T |
|
| Q |
539 |
cttttatggaaccatccccgcacagattggtaacatgtcaaacataagtattttgacttttaaaaataattattttgatggttccatcc |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31056667 |
cttttatggaaccatccccgcacagattggtaacttgtcaaacataagtattttgacttttaaaaataattattttgatggttccatcc |
31056755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 160 - 579
Target Start/End: Original strand, 31100728 - 31101142
Alignment:
| Q |
160 |
atatatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaaataaatccagctacttgaatgatggtactacccacgttgatca---t |
256 |
Q |
| |
|
||||||||||||| ||||| |||||| ||| | ||||| |||||| |||| |||| | ||||| | ||| ||||||||||||||||| |||| | |
|
|
| T |
31100728 |
atatatacagatccgtgaataatttgcaaaccttccactaatatttattataaat-----ctgctacatcaataatggtactacccacgttcatcatcat |
31100822 |
T |
|
| Q |
257 |
gattctgtgtgtccttccaacactctctgttgctgaagatagtgaagcaaaattagcactattgaaatggaaagatagctttgacgaccaaagtcaaact |
356 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |||||||||| |||||||||| |||||||||||| | |
|
|
| T |
31100823 |
gattctgtgtgtccttccaacactttctgtggctgaagacagtgaagcaaaattagcactcttaaaatggaaagctagctttgacaaccaaagtcaaagt |
31100922 |
T |
|
| Q |
357 |
ctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagtgtgacaaatccaatttcatttctaccataggtcttgcaa |
456 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
31100923 |
atcttgtcaacttggaaaaataccacaaatccatgca---gcaaatggagaggaattgagtgtgacaaatccaatctcatttctaccatagatcttgcaa |
31101019 |
T |
|
| Q |
457 |
atttaggattaaaaggtacacttcactctctcaccttctcttcatttcccaacctccttatcatagacatcagtaacaactccttttatggaaccatccc |
556 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | | | || | ||| ||||||| ||||||||||||||| || |
|
|
| T |
31101020 |
atttaggactaaaaggtacacttcactctctcaccttctcttcattccccaacctcataaccctaaatatctataacaaccacttttatggaaccattcc |
31101119 |
T |
|
| Q |
557 |
cgcacagattggtaacatgtcaa |
579 |
Q |
| |
|
|||| || |||||| |||||| |
|
|
| T |
31101120 |
tccacaaataggtaacttgtcaa |
31101142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 283 - 502
Target Start/End: Original strand, 31181944 - 31182157
Alignment:
| Q |
283 |
ctgttgctgaagatagtgaagcaaaattagcactattgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacac |
382 |
Q |
| |
|
|||| ||| |||| ||||||||||||| ||||||||| ||||||||| ||||||||||| | | ||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
31181944 |
ctgtagctcaagacagtgaagcaaaatcagcactattaaaatggaaaaatagctttgacaatccaagtcaagctctcttgccaacttggaaaaataccac |
31182043 |
T |
|
| Q |
383 |
aaatccatgcaaacccaaatggagaggaattaagtgtgacaaatccaatttcatttctaccataggtcttgcaaatttaggattaaaaggtacacttcac |
482 |
Q |
| |
|
||||||||| || |||| ||||||| | |||||||| ||||||| ||| |||||||| |||| || ||||||| ||||||||||||||||| |
|
|
| T |
31182044 |
aaatccatg------cagatggcaaggaattcattgtgacaagtccaattcaattactaccataaaccttgaaagtttaggactaaaaggtacacttcac |
31182137 |
T |
|
| Q |
483 |
tctctcaccttctcttcatt |
502 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
31182138 |
tctctcacattttcttcatt |
31182157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 502
Target Start/End: Original strand, 31138264 - 31138442
Alignment:
| Q |
321 |
aaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagtgtg |
420 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||| ||||||| |||||| | ||||||| ||||||| |||| |
|
|
| T |
31138264 |
aaatggaaacatagctttgacaaccaaagccagtctctcttgtcaacttggaaaaataccacaaatacatgca---caaaatggaaaggaattttttgtg |
31138360 |
T |
|
| Q |
421 |
acaaatccaatttcatttctaccataggtcttgcaaatttaggattaaaaggtacacttcactctctcaccttctcttcatt |
502 |
Q |
| |
|
|||| || || | ||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31138361 |
acaactcgaaatccatttctaccataaaccttgaaaattttggactaaaaggtacacttcactctctcactttttcttcatt |
31138442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 31181799 - 31181913
Alignment:
| Q |
152 |
tcaaacttata--tatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaaataaatccagctacttgaatgatggtactacccacgt |
249 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||| | ||||||| |||| ||| |||||| |||||||||| |||| |||| |||| | |
|
|
| T |
31181799 |
tcaaacttataaatatacagatccctgaaaaattcataaatcatctaacaatattcattagaaaacaatccatctacttgaataatggcactatccacat |
31181898 |
T |
|
| Q |
250 |
tgatcatgattctgt |
264 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
31181899 |
tcatcatgattctgt |
31181913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 579
Target Start/End: Original strand, 31213668 - 31213923
Alignment:
| Q |
318 |
ttgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagt |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||| |||| |||||||||||| || | || | ||||||||| ||| ||||||| | | |
|
|
| T |
31213668 |
ttgaaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggacaagaactacgagtccatgcaac------tgggaaggaattcaat |
31213761 |
T |
|
| Q |
418 |
gtgacaaatccaatttcatttctaccataggtcttgcaaatttaggattaaaaggtacacttcactctctcaccttctcttcatttcccaacctccttat |
517 |
Q |
| |
|
||||||||||||| | ||| ||||||||| ||||||||||| ||| ||||||||| ||| ||| |||| | ||||| ||||| ||||||||||| || |
|
|
| T |
31213762 |
gtgacaaatccaaatccatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactcttagtttctcatcattccccaacctcctcat |
31213861 |
T |
|
| Q |
518 |
catagacatcagtaacaactccttttatggaaccatccccgcacagattggtaacatgtcaa |
579 |
Q |
| |
|
| || | ||| |||||| ||||||||| ||||| || |||| || |||||| |||||| |
|
|
| T |
31213862 |
cctaaatatcttcaacaacaacttttatgggaccattcctccacaaataggtaacttgtcaa |
31213923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University