View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_high_51 (Length: 227)
Name: NF13814_high_51
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_high_51 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 8177199 - 8177420
Alignment:
| Q |
6 |
atcatcttcttctcttcaatctctcattgattctccaaagaagtcttcaaaaactaccatcttcaccagaaaatcaacactctggtttcttgctctgttt |
105 |
Q |
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| T |
8177199 |
atcatcttcttctcttcaatctctcattgattctccaaagaagtcttcaaaaactaccatcttcaccagaaaatcaacactctggtttcttgctctgttt |
8177298 |
T |
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| Q |
106 |
cttgttggtttctttggtatgttcaagtttggtttcaaccctgataccccatttcctcaaaaaccatgttccacaactctgcagaagttctcaatatcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8177299 |
cttgttggtttctttggtatgttcaagtttggtttcaaccctgataccccatttcctcaaaaaccatgttccacaactctgcagaagttctcaatatcaa |
8177398 |
T |
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| Q |
206 |
atcatcattcattttccaaact |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
8177399 |
atcatcattcattttccaaact |
8177420 |
T |
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