View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_high_6 (Length: 606)

Name: NF13814_high_6
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_high_6
NF13814_high_6
[»] chr1 (1 HSPs)
chr1 (16-606)||(6449305-6449893)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Original strand, 6449305 - 6449893
Alignment:
Q  16 atcacaagcttattgttgaaaaatttcacgtaaaaacacaagaagagagaattaaataacgtaaacaattagtcgtgttgttgtataataataagataat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6449305 atcacaagcttattgttgaaaaatttcacgtaaaaacacaagaagagagaattaaataacgtaaacaattagtcgtgttgttgtataataataagataat 6449404  T
Q  116 aaacaaaattaaagcaaagnnnnnnncatttcccggagaatctagagcgcatcaggcgctgaccatggcttcggaatctattaacaaatggaattaacaa 215  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6449405 aaacaaaattaaagcaaagtttttttcatttcccggagaatctagagcgcatcaggcgctgaccatggcttcggaatctattaacaaatggaattaacaa 6449504  T
Q  216 gtctatcaaattggtaatgatatcttgctgtcacattgatcaacaagtaaaaacaaagaatgagaagtatnnnnnnntgagggatcaagcatgggggtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  6449505 gtctatcaaattggtaatgatatcttgctgtcacattgatcaacaagtaaaaacaaagaatgagaagtataaaaaaatgagggatcaagcatgggggtac 6449604  T
Q  316 gagcataattgaaacacacaaacagccataaatgccatatgttataataattatattaattg------tttttaaaacnnnnnnnttcatctccgtgcaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||        |||||||||| ||||    
T  6449605 gagcataattgaaacacacaaacagccataaatgccatatgttataataattatattaattgtttttttttttaaaa----aaaattcatctccgcgcaa 6449700  T
Q  410 ctgttcatactaatccgttcgaagtaacttagattcatttaacgactcaagtatataacatttgtgtcctaaaatgttagnnnnnnnnnnnnnnnnaacc 509  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                ||||    
T  6449701 ctgtgcatactaatccgttcgaagtaacttagattcatttaacgactcaagtatataacatttgtgtcataaaatgttag----ttttttttttttaacc 6449796  T
Q  510 agatacatattctatgcgcgtaactgcaaaaactaatccatcgagttaggtagaatcaaaatcgatggcaaagcactccctcaagagatttaacatt 606  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  6449797 agatacatattctatgcgcgtaactgcaaagactaatccatcgagttgggtagaatcaaaatcggtggcaaagtactccctcaagagatttaacatt 6449893  T

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