View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_10 (Length: 517)
Name: NF13814_low_10
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 10 - 506
Target Start/End: Original strand, 45938216 - 45938712
Alignment:
| Q |
10 |
tactcaagggctagctatagttacataagagattctggttggaatgaaactttggctaagatttcatatgaatggattgaaaagaaggttgcttttgagc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45938216 |
tactcaagggctagctatagttacataagagattctggttggaatgaaactttggctaagatttcatatgaatggattgaaaagaaggttgcttttgagc |
45938315 |
T |
|
| Q |
110 |
ctcaaatgatgcaatggcaatcagcagtgagggatggtttacttgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaa |
209 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45938316 |
ctcaaatgatgcaatggtaatcagcagtgagggatggtttacctgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaa |
45938415 |
T |
|
| Q |
210 |
ggttggagggacaatttttgataaggaaggttatagacacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcg |
309 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45938416 |
ggttggtgggacaatttttgataaggaaggttatagacacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcg |
45938515 |
T |
|
| Q |
310 |
acagttcaaaagatactattcaagtataataaaagtatgtatttaagaatgcctcatattaactttttatatctgccctaaattgtctttataaaatata |
409 |
Q |
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| T |
45938516 |
acagttcaaaagatactattcaagtataataaaagtatgtatttaagaatgcctcatattaactttttatatctaccctaaattgtctttataaaatata |
45938615 |
T |
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| Q |
410 |
cttgtaagatgatgaagtcttaactctctttattcaatgtgttattagagtttttctcgatactcgacaactttacttgaatgcatcaagttgatat |
506 |
Q |
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| T |
45938616 |
cttgtaagatgatgaagtcttaactctctttattcaatgtgttactagagtttttctcgatactcgacaactttacttgaatgcataaagttgatat |
45938712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 45944980 - 45945304
Alignment:
| Q |
10 |
tactcaagggctagctatagttacataagagattctggttggaatgaaactttggctaagatttcatatgaatggattgaaaagaaggttgcttttgagc |
109 |
Q |
| |
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|||||||||||||| |||| ||||||||||| | ||||||||||||||||||||| | || |||||| || ||| ||||||||||||||| |||||||| |
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| T |
45944980 |
tactcaagggctagttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagc |
45945079 |
T |
|
| Q |
110 |
ctcaaatgatgcaatggcaatcagcagtgagggatggtttacttgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaa |
209 |
Q |
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|| |||| | ||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||| |||||| | |||||||| | ||||||||||| |
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| T |
45945080 |
cttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaa |
45945179 |
T |
|
| Q |
210 |
ggttggagggacaatttttgataaggaaggttatagacacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcg |
309 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |
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| T |
45945180 |
ggttggagggacaattttcgataaggaaggtcataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgcc |
45945279 |
T |
|
| Q |
310 |
acagttcaaaagatactattcaagt |
334 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
45945280 |
acagttcaaaagatactattcaagt |
45945304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 261
Target Start/End: Original strand, 3083442 - 3083582
Alignment:
| Q |
121 |
caatggcaatcagcagtgagggatggtttacttgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggaggga |
220 |
Q |
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||||||||||||||||| || ||||| ||| | |||| ||| || || ||||||||||| ||| ||| ||||||| | ||||||||||||||||||| | |
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| T |
3083442 |
caatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcacattcatgggactaaggttggaggta |
3083541 |
T |
|
| Q |
221 |
caatttttgataaggaaggttatagacacactgcagctgat |
261 |
Q |
| |
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|||| ||||| | | ||| ||||||||||||| |||||| |
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| T |
3083542 |
caatctttgaccataatggtcatagacacactgctgctgat |
3083582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 261
Target Start/End: Original strand, 3091882 - 3092022
Alignment:
| Q |
121 |
caatggcaatcagcagtgagggatggtttacttgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggaggga |
220 |
Q |
| |
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||||||||||||||||| || ||||| ||| | |||| ||| || || ||||||||||| ||| ||| |||||| | ||||||||||||||||||| | |
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| T |
3091882 |
caatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcatattcatgggactaaggttggaggta |
3091981 |
T |
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| Q |
221 |
caatttttgataaggaaggttatagacacactgcagctgat |
261 |
Q |
| |
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|||| ||||| | | ||| |||||||||||||||||||| |
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| T |
3091982 |
caatctttgaccataatggtcatagacacactgcagctgat |
3092022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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