View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_11 (Length: 496)
Name: NF13814_low_11
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Original strand, 48648686 - 48649136
Alignment:
| Q |
12 |
agtgagaagaaattgaatatgaatcttgcagcacgagtggatgaatggatgggttcttaatttgttttctcttgagaatgagaatcaaacttgtagttcg |
111 |
Q |
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| T |
48648686 |
agtgagaagaatttgaatatgaatcttgcagcacgagtggatgaatggatgggttcttaatttgttttctcttgagaatgagaatcaaacttgtagttcg |
48648785 |
T |
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| Q |
112 |
agtgttggattaannnnnnnnnnnnnnnnngacttattagtagttgagttcgggcatgcatgctctctgtcccttttttattttattcttccgtaccgat |
211 |
Q |
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| T |
48648786 |
agtgttggattaatttttctttctctttttgacttattagtagttcagttcgggcatgcatgctctctgtcccttttttattttattcttccgtaccgat |
48648885 |
T |
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| Q |
212 |
cgatataatacggtgcatctgcatatcaaacatcataaagtttcctcttagtgggccaattaactgctgggtgatttgtaatggccaatggcatcttctt |
311 |
Q |
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| T |
48648886 |
cgatataatacggtgcatctgcat--caaacatcataaagtttcctcttagtgggccaattaactgctgggtgatttgtaatggccaatggcatcttctt |
48648983 |
T |
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| Q |
312 |
tttgactaaatacaacggcctcttttaagctttttctagagtatatttcaagaatattagtgtgtaaataagtcacatagacaaggttgcaaatagaacc |
411 |
Q |
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| T |
48648984 |
tttgactaaatacaacggactcttttaagctttttctagagtatatttcaagaa---tagtgtgtaaataagtcacatagacaaggttgcaaatagaacc |
48649080 |
T |
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| Q |
412 |
aaacttagtttacgtacaggtacagaccatttacaaacttactttctggttgattttgatga |
473 |
Q |
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| T |
48649081 |
aaacttagtttac------gtacagaccatttacaaacttactttctggttgattttgatga |
48649136 |
T |
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