View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_12 (Length: 477)
Name: NF13814_low_12
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 34452975 - 34453138
Alignment:
| Q |
30 |
tatttatgatgatagtactaaacacattaaatattttgatatcatggcggctttgaaacgcaagtcaaactatcatggaaacgtgattgcaaacacctct |
129 |
Q |
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| T |
34452975 |
tatttatgatgatagtactaaacacattaaatattttgatatcatggcggctttggaacgcaagtcaaactatcatggaaacgtgattccaaacacctct |
34453074 |
T |
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| Q |
130 |
tattatatagtattaacctaagttacaaggtaccactataccagctatgatatatccttgcaca |
193 |
Q |
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| T |
34453075 |
tattatatagtattaacctaagttacaaggtaccactataccagctatgatatatccttgcaca |
34453138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 34453216 - 34453369
Alignment:
| Q |
268 |
tacagagttatcaatcacaaaaatcgaccaaaatattggtgtctccaaactaagaaaaaattggttgatcaaattaaagataaagtcattcctaaatata |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34453216 |
tacagagttatcaatcacaaaaatcgaccaaaatattggtgtctccaaactaagaaaaaattggttgatcaaattaaagataaagtcattcctaaatata |
34453315 |
T |
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| Q |
368 |
tgagagatcgagtacaccattaatagaaaccaaatgaaatactttggttttgga |
421 |
Q |
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| T |
34453316 |
tgagagatcgaatacaccattaatagaaaccaaatgaaatactttggttttgga |
34453369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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