View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_13 (Length: 466)
Name: NF13814_low_13
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 14974114 - 14973653
Alignment:
| Q |
1 |
cattctccaataggctctctacaaaggaccctacaatggaaaaatccttagccaaaagcctcaaaactacatgtccaaatgcaagatcaaaaaatacagc |
100 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||| |
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| T |
14974114 |
cattctccaagaggctctcttcaaaggaccctacaatggaaaaatccttagccaaaagcctcaaaactagatgtccaaatgcaagctcagacaatacagc |
14974015 |
T |
|
| Q |
101 |
aaacttggatttgagaacaccaacattgtttgataacaaatactaccttgaattaatgaatagtcgtggtttgttcacttctgaccaagacttgttcaat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14974014 |
aaacttggatttgagaacaccaacattttttgataacaaatactaccttgaattaatgaatagtcgtggtttgttcacttctgaccaagacttgttcaat |
14973915 |
T |
|
| Q |
201 |
gataagagaacaaagggattagtcacttcatttgccaataatcagaagctgttttttgagaagttttccgttgctattactaagatgagtcaattgagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14973914 |
gataagagaacaaagggattagtcacttcatttgccaataatcagaagctgttttttgagaagttttccgttgctattactaagatgagtcaattgagtg |
14973815 |
T |
|
| Q |
301 |
tgttgacgggtaatcaaggtgaaattcgtgctaagtgcaatgtttcaaacacgaagtaagccatctagataaagcttatttgtgtaccgtcaataagagc |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14973814 |
tgttgacgggtaatcaaggtgaaattcgcgctaagtgcaatgttgtaaacacaaagtaagccatcttgataaagcttatttgtgtaccgtcaataagagc |
14973715 |
T |
|
| Q |
401 |
tagctcaattttcgatgttgatattgtttgattgaacatcttcattccagttcgaacctatg |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14973714 |
tagctcaattttcgatgttgatattgtttgattgaacatcttcattccagttcaaacctatg |
14973653 |
T |
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