View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_18 (Length: 404)
Name: NF13814_low_18
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 1788702 - 1788329
Alignment:
| Q |
20 |
gtgtaacataaaagttccaactattctcattatctgaatacaaaattccatgttacaattcatttacaagaagtaacattctcataaaacaagtacttcn |
119 |
Q |
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| T |
1788702 |
gtgtaacataaaagttccaactattctcattatctgaatacaaaattccatgttgcaattcatttacaagaagtaacattctcataaaacaagtacttca |
1788603 |
T |
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| Q |
120 |
nnnnnnntaaacaatttccaaactaagattacaaaacttgagcttaataacaatcatttcatggaccaattggaatactaagatcttctagagtttcttt |
219 |
Q |
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| T |
1788602 |
aaaaaa-taaacaatttccaaactaagattacaaaacttgagcttaataacaatcatttcatggaccaattggaatactaagatcttctagagtttcttt |
1788504 |
T |
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| Q |
220 |
agtaaaattcttccttccctttgaaatcaataaggcctcttctagtgttttgacaacttgttccatggatggtctttgttggtcaagggatgtgcatgat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1788503 |
agtaaaattcttccttccctttgaaatcaataaggcctcttctagtgttttgacaacttgttccatggatggtctttgttggtcaagggatgtgcatgat |
1788404 |
T |
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| Q |
320 |
agagccaattgaagtgtaaaatcaaatgcttcttcagaataatttccttcaagtctaggatcagcaaattctgtg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1788403 |
agagccaattgaagtgtaaaatcaaatgcttcttcagaataatttccttcaagtctaggatcagcaaattctgtg |
1788329 |
T |
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