View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_19 (Length: 404)
Name: NF13814_low_19
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 33441716 - 33442087
Alignment:
| Q |
18 |
ctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgt |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441716 |
ctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgt |
33441815 |
T |
|
| Q |
118 |
taaatatttggaaaagcttctttggcagcacggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441816 |
taaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtc |
33441915 |
T |
|
| Q |
218 |
aagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441916 |
aagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggta |
33442015 |
T |
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| Q |
318 |
acacttgaaatgtaccatcttctcccataggttgtaattataattttatcttgtccactagttaacacaggt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
33442016 |
acacttgaaatgtaccatcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 33451936 - 33452307
Alignment:
| Q |
18 |
ctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgt |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33451936 |
ctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgt |
33452035 |
T |
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| Q |
118 |
taaatatttggaaaagcttctttggcagcacggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452036 |
taaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtc |
33452135 |
T |
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| Q |
218 |
aagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452136 |
aagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggta |
33452235 |
T |
|
| Q |
318 |
acacttgaaatgtaccatcttctcccataggttgtaattataattttatcttgtccactagttaacacaggt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
33452236 |
acacttgaaatgtaccatcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 394
Target Start/End: Original strand, 33399629 - 33399776
Alignment:
| Q |
247 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
346 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
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| Q |
347 |
ggttgtaattataattttatcttgtccactagttaacacaggttctgc |
394 |
Q |
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|||||| | | ||||||||| |||||||| |||||||| ||| |||| |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 33395729 - 33395880
Alignment:
| Q |
234 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
333 |
Q |
| |
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|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
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| Q |
334 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacac |
385 |
Q |
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||||||| ||||||||||| | || |||| |||| ||||||||||||||||| |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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