View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_2 (Length: 660)
Name: NF13814_low_2
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Complemental strand, 10211088 - 10210455
Alignment:
| Q |
18 |
gaaggaaaactacgacaggcttttagtcgtcgtgctgctatcaaaggttgtatttatgtaaattttataggatttatgagtctcttctgtttcaggaaat |
117 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10211088 |
gaaggaaaactacgacaagctttttgtcgtcgtgctgctatcaaaggttgcatttatgtaagttttataggatttatgagtctcttctgtttcaggaaat |
10210989 |
T |
|
| Q |
118 |
caagagtgtagttatagtcaaagtgatgatgaaatttaattgttggtagactgggatacctcaattagtgaagccattatctttgtgctgatt-ttggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
10210988 |
caagagtgtagttatagtcaaagtgatgatgaaatttaattgttggtagattgggatacctcaattagtgaagccattatctttgtgctgattgtttgtt |
10210889 |
T |
|
| Q |
217 |
gtcataatatcaatatatcttttaagttaagaacttaagatgaaactaattcgtccctgatcttttcatatcaatgtttgttcttttttcatattttact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210888 |
gtcataatatcaatatatcttttaagttaagaacttaagatgaaactaattcgtccctgatcttttcatatcaatgtttgttcttttttcatattttact |
10210789 |
T |
|
| Q |
317 |
ggccatctaaatgacatcattgactatttccttgcttacatattttaaaaaagtaatacttattgttgtgttttgttaaacatatgtgcttatacacatc |
416 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10210788 |
ggccatctaaatgaaatcattaactatttccttgcttacatattttaaaaaagtaatacttatggttgtgttttgttaaacatatgtgcttatacacatc |
10210689 |
T |
|
| Q |
417 |
ttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccgtcttt |
516 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210688 |
ttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccgtcttt |
10210589 |
T |
|
| Q |
517 |
gtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcacaaggtccaggagt |
616 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10210588 |
gtctcctaaagatatatccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagt |
10210489 |
T |
|
| Q |
617 |
ttcatacagccagatgtatcaaaattgctctgtg |
650 |
Q |
| |
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|||||||| | ||||||||||||||||||||||| |
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| T |
10210488 |
ttcatacaactagatgtatcaaaattgctctgtg |
10210455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 379 - 608
Target Start/End: Original strand, 10108439 - 10108665
Alignment:
| Q |
379 |
ttgttgtgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccat |
478 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
10108439 |
ttgttgtgttttgttaaacataagtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttttcctgaacccat |
10108538 |
T |
|
| Q |
479 |
tcttcacgattccaccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatatt-aaagga |
577 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10108539 |
tcttcacgattccaccatcgccgaca----ccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaagga |
10108634 |
T |
|
| Q |
578 |
atggtggctaagggaatatgcatcacaaggt |
608 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
10108635 |
atggtggctaagggaatatgcatcacaaggt |
10108665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 650
Target Start/End: Complemental strand, 10216476 - 10216249
Alignment:
| Q |
412 |
acatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccg |
511 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||| | |||| || |
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| T |
10216476 |
acatcttaaacttttgtgaattaggttctcagaatgcctgttatttatctgcttatcctgaacccatccttcaccattctatcatcacca---------- |
10216387 |
T |
|
| Q |
512 |
tctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcacaaggtcca |
611 |
Q |
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|||||||||||||| ||| |||||||||||| | || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10216386 |
tctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtcca |
10216287 |
T |
|
| Q |
612 |
ggagtttcatacagccagatgtatcaaaattgctctgtg |
650 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
10216286 |
ggagtttcatacagccagatgtatc-aaattgctctgtg |
10216249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 9683633 - 9683529
Alignment:
| Q |
251 |
ttaagatgaaactaattcgtccctgatcttttcatatcaatgtttgttc-ttttttcatattttactggccatctaaatgacatcattgactatttcctt |
349 |
Q |
| |
|
|||||||||||| |||| || |||| |||||| ||||||||||||| || |||| | |||||||| | || |||||||||| ||||| ||||||||||| |
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| T |
9683633 |
ttaagatgaaaccaattagttcctgttcttttgatatcaatgtttggtcattttctgatattttatggtccgtctaaatgacttcattaactatttcctt |
9683534 |
T |
|
| Q |
350 |
gctta |
354 |
Q |
| |
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||||| |
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| T |
9683533 |
gctta |
9683529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 650
Target Start/End: Complemental strand, 9683170 - 9683075
Alignment:
| Q |
548 |
cagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcacaaggtccaggagtttcatacagccagatgtatcaaaattgctct |
647 |
Q |
| |
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|||||||||||||| ||| |||||||||||||| |||| |||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| |
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| T |
9683170 |
cagatgttgagtcatgtagacattaaaggaatggttgctaggggaatatgcatcaca------aggagttccataaagccagatgtatc-aaattgctct |
9683078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 9683988 - 9683918
Alignment:
| Q |
25 |
aactacgacaggcttttagtcgtcgtgctgctatcaaaggttgtatttatgtaaattttataggatttatga |
96 |
Q |
| |
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|||||| ||| |||||| |||||||||||||| |||||||||| |||||||| || |||| ||||||||||| |
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| T |
9683988 |
aactaccacaagctttttgtcgtcgtgctgctgtcaaaggttgcatttatgt-aagtttaaaggatttatga |
9683918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 9683505 - 9683423
Alignment:
| Q |
385 |
tgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
467 |
Q |
| |
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||||||| | ||||||| |||||||| ||||||||||||| ||| ||||||| |||||||||| ||||||| |||||||| |
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| T |
9683505 |
tgttttgctgaacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat |
9683423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 10105166 - 10105248
Alignment:
| Q |
385 |
tgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
467 |
Q |
| |
|
||||||||| ||||| | ||||||| |||||||||| ||||||||||||||| | | ||||| |||||||| ||||||||| |
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|
| T |
10105166 |
tgttttgttgaacatgtatgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgcttat |
10105248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 10213108 - 10213026
Alignment:
| Q |
385 |
tgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
467 |
Q |
| |
|
||||||||||||| ||| || |||| |||||||||| |||| |||||||||| | |||||| |||||||| ||||||||| |
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| T |
10213108 |
tgttttgttaaacttatatgtttatttacatcttaaaattttctgaatcaggttcgtcgaatgcctgttatttctctgcttat |
10213026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 9675602 - 9675554
Alignment:
| Q |
389 |
ttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggt |
437 |
Q |
| |
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||||| ||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
9675602 |
ttgttgaacttatatgcttatttacatcttaaacttttgtgaatcaggt |
9675554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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