View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_21 (Length: 400)
Name: NF13814_low_21
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 156806 - 156600
Alignment:
| Q |
82 |
ctcttatttgatgagaaaacacaaaatgtgtctcttttagtggtgttgtgtgctactaaaaatcaatcctatagtaaaatatatttnnnnnnnnctcttt |
181 |
Q |
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| T |
156806 |
ctcttatttgatgagaaaacacaaaacgtgtctcttttagtggtgttgtgtgctactaaaattcaatcctataataaaatatatttaaaaaaa-ctcttc |
156708 |
T |
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| Q |
182 |
aattgtttaaactttaatctttatctcattggagaaaacattgtttggactgtagtgatataccaactttgacggtgatcgtagcaacattgtttggaat |
281 |
Q |
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| T |
156707 |
aattgtttaaactttaatctttatctcattggagaaaacactgtttggactgtagtgatataccaactttgacggtgatcgtagcaacattgtttggatt |
156608 |
T |
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| Q |
282 |
atgcttgc |
289 |
Q |
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|||||||| |
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| T |
156607 |
atgcttgc |
156600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 156559 - 156499
Alignment:
| Q |
330 |
aaaggataactagcatcagtattccaagcttaataataaagcaaattgtgtgttgtttatg |
390 |
Q |
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| T |
156559 |
aaaggataactagcatcagtattccaagcttaataacaaagcaaattgtgtgttgtttatg |
156499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 104 - 289
Target Start/End: Complemental strand, 39660493 - 39660309
Alignment:
| Q |
104 |
aaaatgtgtctcttttagtggtgttgtgtgctactaaaaatcaatcctatagtaaaatatatttnnnnnnnnctctttaattgtttaaactttaatcttt |
203 |
Q |
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| T |
39660493 |
aaaacgtgtctcttttagtggtgttgtttgctactaaaaatcaatcctataataaaatatatttaaaaaaa-ctcttcaattgtttaaactttaatcttt |
39660395 |
T |
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| Q |
204 |
atctcattggagaaaacattgtttggactgtagtgatataccaactttgacggtgatcgtagcaacattgtttggaatatgcttgc |
289 |
Q |
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| T |
39660394 |
atctcattggagaaaacactatttgaactgtagtgatataccaactttgacggtgatcgtagcaacattgtttggattatgcttgc |
39660309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 39660268 - 39660208
Alignment:
| Q |
330 |
aaaggataactagcatcagtattccaagcttaataataaagcaaattgtgtgttgtttatg |
390 |
Q |
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| T |
39660268 |
aaaggataattagcatcagtattccaagcttaataataaagcaaattgtgtgttgtttatg |
39660208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 39660550 - 39660513
Alignment:
| Q |
82 |
ctcttatttgatgagaaaacacaaaatgtgtctctttt |
119 |
Q |
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| T |
39660550 |
ctcttatttgatgagaaaacacaaaacgtgtctctttt |
39660513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 8944593 - 8944672
Alignment:
| Q |
192 |
actttaatctttatctcattggagaaaacatt-gtttggactgtagtgatataccaactttgacggtgatcgtagcaacatt |
272 |
Q |
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| T |
8944593 |
actttaatctttatcctattggagaaaacattccttaggactgtagtgatat--caactgtgacggtgattgtagcatcatt |
8944672 |
T |
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