View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_22 (Length: 395)
Name: NF13814_low_22
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_22 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 193 - 378
Target Start/End: Complemental strand, 4339950 - 4339766
Alignment:
| Q |
193 |
gcagcacaagaagatggagggggagggggttggggtaatgtttgtttcctttctaggatgaaatagacttcgatggtcaacctacctgaggaatcatctg |
292 |
Q |
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| T |
4339950 |
gcagcacaagaagatggagggggagggggttggggtaatgtttgtttcctttctaggacaaaagagacttcgatggtcaacctacct-aggaatcatcta |
4339852 |
T |
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| Q |
293 |
tggactctactagtgtttacttcttttttgtctttgattctaaaatccaaaatagattgattggaagagcattctttgatttgttg |
378 |
Q |
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| T |
4339851 |
tggactctactagtgtttacttcttttttgtctttgattctaaaatccaaaatagattgattggaagagcattctttgatttgttg |
4339766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 4340144 - 4340016
Alignment:
| Q |
1 |
tatttcattgatataattataaatgacaaaaacataaaattaaagagtcaaagatgatttacgaattcttattttattaatatatcatagtacatttaca |
100 |
Q |
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| T |
4340144 |
tatttcattgatataattataaatgacaaaaacataaaattaaagagacaaagatgatttacgaattcttattttattaatatatcatagtacatttaca |
4340045 |
T |
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| Q |
101 |
tcaaaattgaaccttaaagcttattaccc |
129 |
Q |
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| T |
4340044 |
tcaaaattgaaccttaaagcttattaccc |
4340016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41507980 - 41508019
Alignment:
| Q |
1 |
tatttcattgatataattataaatgacaaaaacataaaat |
40 |
Q |
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| T |
41507980 |
tatttcattgacataattataaatgacaaaaacataaaat |
41508019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 24204397 - 24204322
Alignment:
| Q |
200 |
aagaagatggagggggaggg-ggttggggtaatgtttgtttcctttctaggatgaaatagacttcgatggtcaacc |
274 |
Q |
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| T |
24204397 |
aagaagatggagggggaaaaaggttggggtaatgtttgtttcctttgtaggacgaatgagactttaatggtcaacc |
24204322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 30857812 - 30857727
Alignment:
| Q |
36 |
aaaattaaagagtcaaagatgatttacgaattcttattttattaatatatcatagtacatttacatcaaaattgaaccttaaagcttatta |
126 |
Q |
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| T |
30857812 |
aaaattaaagagacaaagatgat--acaaattttcattttattatt---tcatagtatatttacaataaaattgaaacttaaagcttatta |
30857727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 181651 - 181595
Alignment:
| Q |
216 |
agggggttggggtaatgtttgtttcctttctaggatgaaatagacttcgatggtcaa |
272 |
Q |
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| T |
181651 |
agggggctggggtaaggtttgtttcctttctagggcgaaagagaccttgatggtcaa |
181595 |
T |
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