View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13814_low_23 (Length: 394)
Name: NF13814_low_23
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 54912353 - 54912716
Alignment:
| Q |
20 |
ctttacagggtacaagacccttaatccagaaagaatagcactgtgaagtacaacacctctcaatttttgcaatttagaagccaagtgtgtcgttggtcca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54912353 |
ctttacagggtacaagacccttaatccagaaagaatagcactgtgaagtacaacacctctcaatttttgcaatttagaagccaagtgtgtcgttggtcca |
54912452 |
T |
|
| Q |
120 |
cttccaacggattgaccatacaaaatcaaatcttcttgcttaaatccatattcattcctcaataaattatatacagcctctatgtcgtaatacgtgttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54912453 |
cttccaacggattgaccatacaaaatcaaatcttcttgcttaaatccatattcattcctcaataaattatatacagcctctatgtcgtaatacgtgttga |
54912552 |
T |
|
| Q |
220 |
actcagatggctatcacagttggaaagaatatagataaatgttagattcacttggataaaaacataattcaaccaaaaaattgataatttgtgttactca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54912553 |
actcagatggctatcacagttggaaagaatatagataaatgttagattcacttggataaaaacataattcaaccaaaaaattgataatttgtgttactca |
54912652 |
T |
|
| Q |
320 |
aaacctcttcatattagtaaaatgagttacttaccttacctgtggaacgtccataaccagaata |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54912653 |
aaacctcttcatattagtaaaatgagttacttaccttacctgtggaacgtccataaccagaata |
54912716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University