View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_25 (Length: 383)
Name: NF13814_low_25
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 24543236 - 24543600
Alignment:
| Q |
13 |
aaaatgaaagtggtgtttcagatatgtttaggaccaaagaacccctttttggtgctgannnnnnngctgcaagaagttgcatggagattgaaggtaaatc |
112 |
Q |
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|||||||| ||| ||| |||||||||||||| |||| || ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24543236 |
aaaatgaatctggagttacagatatgtttagggtcaaaaaaatcctttttggtgctgattttattgctgcaagaagttgcatggagattgaaggtaaata |
24543335 |
T |
|
| Q |
113 |
tctagagtcaattgaaaagttatgccagaaaaaagtgattccagttggattattgccaccttcactacaattcaatgaagacaaaaaagatgaaagttgg |
212 |
Q |
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| T |
24543336 |
tctagaattaattgaaaatctatgcaagaaaaaagtgattccagttggattattgccaccgtcgctacagatcggcgaagaaaaaaatgatgaaaattgg |
24543435 |
T |
|
| Q |
213 |
gatacaatccttaaatggttggataatcatgaaaaaaggtcagtggtttatgttgcatttggaagtgaagtaacattaagtgatgaagaattcactgaga |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24543436 |
gatacaatccttaaatggttggataaacatgaaaaaaggtcagtggtttatgttgcatttggaagtgaagtaatattaagtgatgaagaattcactgaga |
24543535 |
T |
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| Q |
313 |
ttggtaagggattagagttatcaagttttccttatctttggattctgaagaaccaagttaaagat |
377 |
Q |
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| T |
24543536 |
tagctaaaggattagaactatctagttttccttatctttggattctgaagaaccaagttaaagat |
24543600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 24530647 - 24530283
Alignment:
| Q |
13 |
aaaatgaaagtggtgtttcagatatgtttaggaccaaagaacccctttttggtgctgannnnnnngctgcaagaagttgcatggagattgaaggtaaatc |
112 |
Q |
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|||||||| ||| ||| ||||| |||| ||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24530647 |
aaaatgaatctggagttacagatgtgttcagggtcaaagaaactctttttggtgctgattttattgctgcaagaagttgcatggagattgaaggtaaatt |
24530548 |
T |
|
| Q |
113 |
tctagagtcaattgaaaagttatgccagaaaaaagtgattccagttggattattgccaccttcactacaattcaatgaagacaaaaaagatgaaagttgg |
212 |
Q |
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|||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||| |||| |
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| T |
24530547 |
tctagaattaattgaaaatctatgcaagaaaaaagtgattccagttggattattgccaccgtcgctacagatcggcgaagaaaaaaatgatgaaaattgg |
24530448 |
T |
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| Q |
213 |
gatacaatccttaaatggttggataatcatgaaaaaaggtcagtggtttatgttgcatttggaagtgaagtaacattaagtgatgaagaattcactgaga |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24530447 |
gatacaatccttaaatggttggataaacatgaaaaatggtcagtggtttatgttgcatttggaagtgaagtaatattaagtgatgaagaattcactgaga |
24530348 |
T |
|
| Q |
313 |
ttggtaagggattagagttatcaagttttccttatctttggattctgaagaaccaagttaaagat |
377 |
Q |
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| | ||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24530347 |
tagctaaaggattagaactatctagttttccttatctttggattctgaagaaccaagttaaagat |
24530283 |
T |
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