View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_low_28 (Length: 343)

Name: NF13814_low_28
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_low_28
NF13814_low_28
[»] chr8 (11 HSPs)
chr8 (1-338)||(3788528-3788850)
chr8 (184-338)||(3785818-3785972)
chr8 (184-338)||(19472511-19472664)
chr8 (184-338)||(19543436-19543589)
chr8 (184-338)||(19589107-19589260)
chr8 (184-320)||(3479031-3479167)
chr8 (184-316)||(31909148-31909281)
chr8 (4-159)||(8258665-8258820)
chr8 (216-268)||(4678093-4678146)
chr8 (229-316)||(35416138-35416228)
chr8 (216-268)||(4676148-4676201)
[»] chr7 (6 HSPs)
chr7 (184-338)||(2576966-2577120)
chr7 (184-316)||(18446570-18446701)
chr7 (184-273)||(26389160-26389249)
chr7 (237-317)||(1715751-1715832)
chr7 (236-338)||(1773552-1773657)
chr7 (295-338)||(26389252-26389295)
[»] chr6 (4 HSPs)
chr6 (185-338)||(21146847-21147003)
chr6 (216-316)||(9664681-9664784)
chr6 (209-338)||(33638806-33638936)
chr6 (219-316)||(787288-787388)
[»] chr1 (4 HSPs)
chr1 (207-334)||(16385572-16385699)
chr1 (210-317)||(27356068-27356175)
chr1 (216-316)||(20225540-20225643)
chr1 (275-316)||(20226871-20226912)
[»] chr5 (5 HSPs)
chr5 (211-337)||(4215245-4215372)
chr5 (220-329)||(27172862-27172973)
chr5 (243-337)||(37498232-37498327)
chr5 (184-271)||(18587465-18587553)
chr5 (216-268)||(39040636-39040689)
[»] scaffold0016 (1 HSPs)
scaffold0016 (184-338)||(48375-48532)
[»] chr2 (2 HSPs)
chr2 (207-320)||(20509153-20509265)
chr2 (216-316)||(26608055-26608159)
[»] chr4 (3 HSPs)
chr4 (207-338)||(46432451-46432582)
chr4 (216-316)||(55849469-55849572)
chr4 (257-316)||(55852054-55852115)
[»] chr3 (8 HSPs)
chr3 (230-338)||(51308823-51308933)
chr3 (219-338)||(24595226-24595347)
chr3 (231-338)||(27462140-27462249)
chr3 (216-339)||(20868693-20868820)
chr3 (216-271)||(35610815-35610871)
chr3 (216-302)||(447135-447222)
chr3 (216-316)||(20871331-20871436)
chr3 (286-338)||(51306420-51306471)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 3788850 - 3788528
Alignment:
Q  1 gaggtggaagcaagaatttgtgcaaggggaagtagaacatggttgggcccttgtactattaactccgattgtagtacaaagtgcatcaaacaagagcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3788850 gaggtggaagcaagaatttgtgcaaggggaagtagaacatggttgggcccttgtactattaactccgattgtagtacaaagtgcatcaaacaagagcatg 3788751  T
Q  101 caacattcggtgcttgtggcggctttggtttggattgtgtctgctacatgaattgttgaacattgagtttctatcaaccaatttgttgaaatatagacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3788750 caacattcggtgcttgtggcggctttggtttggattgtgtctgctacatgaattgttgaacattgagtttctatcaaccaatttgttgaaatatagacag 3788651  T
Q  201 ggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattcttgtatcatttcaac 300  Q
     ||               ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3788650 tga---------------tagttagggtactagtatagtcactgtataagtcacaagttgacccatttgtatcactttttcattcttgtatcatttcaac 3788566  T
Q  301 tattatcaatacaataatttcctaagcttcttctctct 338  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  3788565 tattatcaatacaataattttctaaacttcttctctct 3788528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 3785972 - 3785818
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcat 283  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3785972 tgttgaaatatagatagtgatactcattttagagttagttagggtactactatagtcactatataagtcacaagttgactcatttgtatcacttttttat 3785873  T
Q  284 tcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3785872 tcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 3785818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 19472664 - 19472511
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagtta-gggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttca 282  Q
    |||||||||||||| ||  ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||  ||| |||||    
T  19472664 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttca 19472567  T
Q  283 ttcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
     | ||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||    
T  19472566 cttttgtatcatttcaactattttcaatataataatttcttaagctttttctctct 19472511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 19543589 - 19543436
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagtta-gggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttca 282  Q
    |||||||||||||| ||  ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||  ||| |||||    
T  19543589 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttca 19543492  T
Q  283 ttcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
     | ||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||    
T  19543491 cttttgtatcatttcaactattttcaatataataatttcttaagctttttctctct 19543436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 338
Target Start/End: Original strand, 19589107 - 19589260
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagtta-gggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttca 282  Q
    |||||||||||||| ||  ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||  ||| |||||    
T  19589107 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttca 19589204  T
Q  283 ttcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
     | ||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||    
T  19589205 cttttgtatcatttcaactattttcaatataataatttcttaagctttttctctct 19589260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 3479031 - 3479167
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcat 283  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||||| | || |||||     
T  3479031 tgttgaaatatagatagttatactcattttagagttagttagggtattagtttagtccctacataagtcacaagttgactcatttgtaccgctctttcac 3479130  T
Q  284 tcttgtatcatttcaactattatcaatacaataattt 320  Q
    | ||| ||| |||||||||||||||||||| ||||||    
T  3479131 tgttgcatcttttcaactattatcaatacagtaattt 3479167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 31909281 - 31909148
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgta--tcactttttc 281  Q
    |||||||||||||| ||  ||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||  || || ||||    
T  31909281 tgttgaaatatagatagtaatactcattttagagtaagttaaggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 31909182  T
Q  282 attcttgtatcatttcaactattatcaatacaata 316  Q
    ||| ||||||| |||||||||| ||||||||||||    
T  31909181 att-ttgtatcttttcaactatcatcaatacaata 31909148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 8258665 - 8258820
Alignment:
Q  4 gtggaagcaagaatttgtgcaaggggaagtagaacatggttgggcccttgtactattaactccgattgtagtacaaagtgcatcaaacaagagcatgcaa 103  Q
    |||||||||| | |||||| ||||  ||||||||||| || ||| | ||| || | |||||| ||||||||||||||||||||||||   ||| ||||||    
T  8258665 gtggaagcaacactttgtggaaggaaaagtagaacattgtcggggcgttgcaccagtaactcagattgtagtacaaagtgcatcaaatgggagtatgcaa 8258764  T
Q  104 cattcggtgcttgtggcggctttggtttggattgtgtctgctacatgaattgttga 159  Q
    |||  ||  ||||||| ||||||  | | |||||| |||||| | | |||||||||    
T  8258765 catatggctcttgtggaggcttttatattgattgtatctgcttctttaattgttga 8258820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 4678093 - 4678146
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaa-gttgactcattt 268  Q
    |||||||||| |||||||| |||| |||||||||||||||| ||||||||||||    
T  4678093 agttagttagagtactagtttagttactatataagtcacaaggttgactcattt 4678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 35416228 - 35416138
Alignment:
Q  229 actagtatagtcactatataagtcacaag-ttgactcatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaata 316  Q
    |||||| |||| ||||||||||||||| | ||||||||||||||  |  ||| |||||| |||||||||||||||||  || |||||||||    
T  35416228 actagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaata 35416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 4676148 - 4676201
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcaca-agttgactcattt 268  Q
    |||||||||| |||||||| |||| |||||||||||||||  ||||||||||||    
T  4676148 agttagttagagtactagtttagttactatataagtcacagggttgactcattt 4676201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 184 - 338
Target Start/End: Original strand, 2576966 - 2577120
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcat 283  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2576966 tgttgaaatatagatagtgatactcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcat 2577065  T
Q  284 tcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2577066 tcttgtatcatttcaactattatcaatacaataattttctaagcttcttctctct 2577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 18446570 - 18446701
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcat 283  Q
    |||||||||||||  ||  ||| ||||||||||||||||||| | ||||||  |||||||||||||||||| |||||| || ||||||||  | |||||     
T  18446570 tgttgaaatatagttagttatactcattttagagttagttagtgcactagttcagtcactatataagtcactagttgattc-tttgtatctttctttcac 18446668  T
Q  284 tcttgtatcatttcaactattatcaatacaata 316  Q
    | |||||||||||||||||||||||||||||||    
T  18446669 ttttgtatcatttcaactattatcaatacaata 18446701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 26389160 - 26389249
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatc 273  Q
    |||||||||||||  ||  ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  26389160 tgttgaaatataggtagttatactcattttagagttagttagtgtactagtttagtcactatataagtcacaagttgactcttttgtatc 26389249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 1715832 - 1715751
Alignment:
Q  237 agtcactatataagtcacaagttgactcatttgtatcact-ttttcattcttgtatcatttcaactattatcaatacaataa 317  Q
    ||||||||||||||| || ||||||||| |||||||| || |||||| | || |||||||||||||||||||||||||||||    
T  1715832 agtcactatataagttactagttgactcttttgtatctctcttttcacttttatatcatttcaactattatcaatacaataa 1715751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 1773657 - 1773552
Alignment:
Q  236 tagtcactatataagtcaca-agttgactcatttgtatcactttttcattcttg----tatcatttcaactattatcaatacaataatttcctaagcttc 330  Q
    |||||||||||| ||||||| |||||||||||||||||  || ||||||| |||    ||||||||| ||||||||||||||||||| ||  |||||||     
T  1773657 tagtcactatattagtcacagagttgactcatttgtat--ctctttcatttttgtatatatcatttctactattatcaatacaataactttgtaagcttt 1773560  T
Q  331 ttctctct 338  Q
    | ||||||    
T  1773559 tactctct 1773552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 26389252 - 26389295
Alignment:
Q  295 ttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
    |||||||||||||||||||||||||| ||||| || ||||||||    
T  26389252 ttcaactattatcaatacaataattttctaagttttttctctct 26389295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 185 - 338
Target Start/End: Complemental strand, 21147003 - 21146847
Alignment:
Q  185 gttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcacta--tataagtcacaagttgactcatttgtatcact-ttttc 281  Q
    ||||||||||||| ||  ||| |||||||| ||||||||||||||||||| | |||| |   ||||||||||| ||||||||||||||| | || |||||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagttagggtactagttttgtcaatgactataagtcacatgttgactcatttgtacctctcttttc 21146904  T
Q  282 attcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| || ||||||||    
T  21146903 attcttgtatcatttcaactattttcaatacaataattttctaagttttttctctct 21146847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 9664784 - 9664681
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatac 312  Q
    ||||| |||||  |||||| |||| ||||||||||||||| | |||||||||||||| |   ||||||||||||||||||||||||||||| ||||||||    
T  9664784 agttaattaggacactagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatac 9664685  T
Q  313 aata 316  Q
    ||||    
T  9664684 aata 9664681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 338
Target Start/End: Complemental strand, 33638936 - 33638806
Alignment:
Q  209 attttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcact-ttttcattcttgtatcatttcaactattatc 307  Q
    ||||||||||||||||| ||| |||| || ||  ||||||||||| |||||||||| |||||||| || |||| | | |||||||  ||||| |||||||    
T  33638936 attttagagttagttagtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaacttttgtatctcttcaattattatc 33638837  T
Q  308 aatacaataatttcctaagcttcttctctct 338  Q
    || |||||||||| | ||| || ||||||||    
T  33638836 aagacaataattttcaaagttttttctctct 33638806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 787288 - 787388
Alignment:
Q  219 tagttagggtactagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatacaat 315  Q
    ||||||||  |||||| |||| ||||||||||||| | | |||||||||||||| |   |||| |||||||||||||||||||| ||| |||||||||||    
T  787288 tagttaggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaat 787387  T
Q  316 a 316  Q
    |    
T  787388 a 787388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 334
Target Start/End: Original strand, 16385572 - 16385699
Alignment:
Q  207 tcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattcttgtatcatttcaactattat 306  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||   || ||||||| |||||||||||   |||| ||    
T  16385572 tcattttagagttagttagggtactagtttagtcactgtataagtcacaagttgactcatttgtacatctctttcatttttgtatcattttccctataat 16385671  T
Q  307 caatacaataatttcctaagcttcttct 334  Q
    ||||||||||| ||  ||||||| ||||    
T  16385672 caatacaataactttgtaagctttttct 16385699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 27356175 - 27356068
Alignment:
Q  210 ttttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattcttgtatcatttcaactattatcaa 309  Q
    |||||| ||||||||| |||||| | |||||||| |||||| || ||||||| | || |||||| || ||||||| |||||||||||  ||||| |||||    
T  27356175 ttttagtgttagttagtgtactaatttagtcactgtataagacataagttgaattatatgtatctctctttcatttttgtatcattttcactatcatcaa 27356076  T
Q  310 tacaataa 317  Q
    ||||||||    
T  27356075 tacaataa 27356068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 20225643 - 20225540
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatac 312  Q
    |||||||||||  |||||| |||| ||||||||||||||| | ||||||| |||||| |   ||||| ||||||||||||||||||| ||| ||||||||    
T  20225643 agttagttaggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatac 20225544  T
Q  313 aata 316  Q
    ||||    
T  20225543 aata 20225540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 20226912 - 20226871
Alignment:
Q  275 ctttttcattcttgtatcatttcaactattatcaatacaata 316  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  20226912 ctttttcattcttgtatcatttcaattatcatcaatacaata 20226871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 4215245 - 4215372
Alignment:
Q  211 tttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcact-ttttcattcttgtatcatttcaactattatcaa 309  Q
    ||||||||||||||| | ||||||  |||||||||||||||||  ||||||||| |||||||| || |||||| | || |||||||||||||||||||||    
T  4215245 tttagagttagttagtgcactagttgagtcactatataagtcattagttgactcttttgtatctctcttttcacttttatatcatttcaactattatcaa 4215344  T
Q  310 tacaataatttcctaagcttcttctctc 337  Q
    |||||||| || |||||||| |||||||    
T  4215345 tacaataactttctaagctttttctctc 4215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 27172973 - 27172862
Alignment:
Q  220 agttagggtactagtatagtcactatataagtcacaagttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatacaataa 317  Q
    ||||||| ||||||| |||| |||||||||||||  || ||||||||||||| |   ||||| ||||||||||||||||||||||| ||||||| ||||     
T  27172973 agttaggatactagtttagttactatataagtcattaggtgactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaatagaatag 27172874  T
Q  318 tttcctaagctt 329  Q
    ||| | ||||||    
T  27172873 ttttccaagctt 27172862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 37498327 - 37498232
Alignment:
Q  243 tatataagtcacaagttgactcatttgtatcactt-tttcattcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctc 337  Q
    ||||||||||||||||||||||||||||| | ||| ||| | | || ||||||||||||||| |||||||||||||| | ||||| || |||||||    
T  37498327 tatataagtcacaagttgactcatttgtaccccttcttttacttttatatcatttcaactatcatcaatacaataatcttctaagttttttctctc 37498232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 18587553 - 18587465
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagttagggtactagtatagtcactatataagtcacaa-gttgactcatttgta 271  Q
    |||||||||||||  ||  ||| | ||||||||||||||||||||||||||   || |||||||||||||||| ||||| |||||||||    
T  18587553 tgttgaaatataggtagttatacttattttagagttagttagggtactagttaggttactatataagtcacaaggttgattcatttgta 18587465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 39040689 - 39040636
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaa-gttgactcattt 268  Q
    |||||||||| |||||||| |||| |||||||||||||||| ||||||||||||    
T  39040689 agttagttagagtactagtttagttactatataagtcacaaggttgactcattt 39040636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 338
Target Start/End: Original strand, 48375 - 48532
Alignment:
Q  184 tgttgaaatatagacagggatattcattttagagttagtta-gggtactagtatagtcactatataagtcacaagttgactcatttgtatcact-ttttc 281  Q
    |||||||||||||  ||  ||| |||||||||||||||||| ||||| |||| || ||||||||||||||||||||||| || |||||| |  | |||||    
T  48375 tgttgaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttc 48474  T
Q  282 attcttgtatcatttcaactattatcaatacaataatttcctaagc-ttcttctctct 338  Q
    | | |||||||  |||||| ||||||||||||||||||| |||||| |||||||||||    
T  48475 aattttgtatcccttcaacaattatcaatacaataattttctaagctttcttctctct 48532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 20509265 - 20509153
Alignment:
Q  207 tcattttagagttagttaggg-tactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattcttgtatcatttcaactatta 305  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| |||| || ||||||| ||||||  ||||||||| ||    
T  20509265 tcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttatatctctctttcatttttgtat--tttcaactagta 20509168  T
Q  306 tcaatacaataattt 320  Q
    || ||| ||||||||    
T  20509167 tcgatataataattt 20509153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 26608159 - 26608055
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaa-gttgactcatttgta--tcactttttcattcttgtatca-tttcaactattatcaata 311  Q
    ||||||||||| |||||||  ||| |||||||||||||||| |||||||||| ||||  |  ||||||||||||||||||| |||||||||| |||||||    
T  26608159 agttagttaggatactagttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaata 26608060  T
Q  312 caata 316  Q
    |||||    
T  26608059 caata 26608055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 338
Target Start/End: Original strand, 46432451 - 46432582
Alignment:
Q  207 tcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattcttgtatcatttcaactattat 306  Q
    ||||||||||||||||||| | |||| | |||||||  || ||||||| ||||||||| ||| |||| || ||||| | |||||||||||  ||||||||    
T  46432451 tcattttagagttagttagtgcactaatttagtcaccgtaaaagtcactagttgactcttttatatccctctttcacttttgtatcatttttactattat 46432550  T
Q  307 caatacaataatttcctaagcttcttctctct 338  Q
    ||||||||||||||  ||||||| | ||||||    
T  46432551 caatacaataattttgtaagcttttcctctct 46432582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 55849572 - 55849469
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatac 312  Q
    |||||||||||  ||||||  ||| ||||||||||||||| | |||||||||||||| |   ||||| ||||||||||||||||||||||| ||||||||    
T  55849572 agttagttaggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatac 55849473  T
Q  313 aata 316  Q
    ||||    
T  55849472 aata 55849469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 55852115 - 55852054
Alignment:
Q  257 gttgactcatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaata 316  Q
    |||||||||||||||  |  ||||| ||||||||||||||||||||||| ||||||||||||    
T  55852115 gttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaata 55852054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 51308823 - 51308933
Alignment:
Q  230 ctagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatacaataatttcctaag 326  Q
    ||||| |||| ||||||||||||||| | ||||||||||||||  |  || ||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  51308823 ctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataattt-ataag 51308921  T
Q  327 cttcttctctct 338  Q
    ||| ||||||||    
T  51308922 ctttttctctct 51308933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 24595226 - 24595347
Alignment:
Q  219 tagttagggtactagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatca-tttcaactattatcaatacaa 314  Q
    ||||||||  |||||| |||| ||||||||||||||| | ||||||||||||||  |  ||||||||||||||||||| |||||||||| ||||||||||    
T  24595226 tagttaggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaa 24595325  T
Q  315 taatttcctaagcttcttctctct 338  Q
    || ||| |||||||| ||||||||    
T  24595326 tagttt-ctaagctt-ttctctct 24595347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 338
Target Start/End: Original strand, 27462140 - 27462249
Alignment:
Q  231 tagtatagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatacaataatttcctaagc 327  Q
    |||| |||| ||||||||||||| | | |||||||||||||| |   ||||||||||||||||||||||||||||| |||||||||||| ||| | ||||    
T  27462140 tagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagc 27462239  T
Q  328 ttcttctctct 338  Q
    || ||||||||    
T  27462240 tt-ttctctct 27462249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 20868693 - 20868820
Alignment:
Q  216 agttagttagggtactagtat-agtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcat-ttcaactattatcaat 310  Q
    ||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||| |   ||||||||||||||||| || ||||||||| ||||||    
T  20868693 agttagttaggatactagttttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaat 20868792  T
Q  311 acaataatttcctaagcttcttctctctc 339  Q
    |||||| ||| |||||||| |||||||||    
T  20868793 acaatagttttctaagctt-ttctctctc 20868820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 35610815 - 35610871
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaa-gttgactcatttgta 271  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  35610815 agttagttagggtactagtttagttactatataagtcacaaggttgactcatttgta 35610871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 447222 - 447135
Alignment:
Q  216 agttagttagggtactagtatagtcactatataagtcacaa-gttgactcatttgtatcactttttcattcttgtatcatttcaacta 302  Q
    |||| |||||||||||||| |||  |||||| ||||||||| ||||||||||||||| | || ||||||| || ||||||||||||||    
T  447222 agttggttagggtactagtttagatactatagaagtcacaaagttgactcatttgtacctctctttcatttttctatcatttcaacta 447135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 20871331 - 20871436
Alignment:
Q  216 agttagttagggtactagtat-agtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcattt-caactattatcaat 310  Q
    ||||||||||| ||||||| | ||| ||||||||||||||| | |||||||||||||| |   ||||||||||||||||| |||| ||||||| ||||||    
T  20871331 agttagttaggatactagttttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaat 20871430  T
Q  311 acaata 316  Q
    ||||||    
T  20871431 acaata 20871436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 51306420 - 51306471
Alignment:
Q  286 ttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctct 338  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  51306420 ttgtatcattttaactattatcaatacaataattt-ctaagctttttctctct 51306471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University