View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_30 (Length: 336)
Name: NF13814_low_30
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 3341783 - 3342088
Alignment:
| Q |
19 |
ccgacttctctaaagtgaacactttgagcacacttgttttagagtgtaacaaatcactttagaggaaccaaatcttagagcatgtggttttcatttgtct |
118 |
Q |
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| T |
3341783 |
ccgacttctctaaagtgaacactttgagcacacttgttttagagtgtaacaaatcactttagaggaaccaaatcttagagcatgtggttttcatttgtct |
3341882 |
T |
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| Q |
119 |
atattaatggttaatgaaaaacagtgatgacatatttcacgactgggcacaatcaaagcgttctattattccaatttacaagaagcttattccaacagga |
218 |
Q |
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| T |
3341883 |
atattaatggttaatgaaaaacagtgatgacatatttcacgactgggcacaatcaaagcgttctattattccaatttacaagaagcttattccaacagga |
3341982 |
T |
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| Q |
219 |
cttagaatttggctttacaggtaattaattcattcattcaatcaatcaaatagtactattcaagaccatgcatgcatgtggtgcctgtgacattttctca |
318 |
Q |
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| T |
3341983 |
cttagaatttggctttacaggtaattaattaattcattcattcaatcaaatagtactattcaagaccatgcatgcatgtggtgcctgtgacattttctca |
3342082 |
T |
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| Q |
319 |
tatatt |
324 |
Q |
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|||||| |
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| T |
3342083 |
tatatt |
3342088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 3334387 - 3334445
Alignment:
| Q |
184 |
ttattccaatttacaagaagcttattccaacaggacttagaatttggctttacaggtaa |
242 |
Q |
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|||| ||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
3334387 |
ttatcccaatttacaagaagcttatttcagccggacttagaatttggctttacaggtaa |
3334445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 35793069 - 35793011
Alignment:
| Q |
184 |
ttattccaatttacaagaagcttattccaacaggacttagaatttggctttacaggtaa |
242 |
Q |
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|||| |||||||||||||| ||||| || |||||||||| |||||| ||||||||||| |
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| T |
35793069 |
ttatcccaatttacaagaaacttatatcagcaggacttaggatttgggtttacaggtaa |
35793011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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