View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13814_low_31 (Length: 335)
Name: NF13814_low_31
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_31 |
 |  |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 213241 - 213542
Alignment:
| Q |
19 |
tggacaaaatacacgtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
213241 |
tggacaaaatacacgtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtgg |
213340 |
T |
 |
| Q |
119 |
atcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgcttaatttatgcttagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
213341 |
atcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgcttaatttatgcttagt |
213440 |
T |
 |
| Q |
219 |
ttggaataaacatttcagttagtacttattaacaaaagaaaaatggaaatgcttttacattaactattttcttatctaatttttcaaaagctcttcattt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
213441 |
ttggaataaacatttcagttagtacttattaacaaaagaaaaatggaaatgttgttacattaactatgtgcttatctaatttttcaaaagctcttcattt |
213540 |
T |
 |
| Q |
319 |
ac |
320 |
Q |
| |
|
|| |
|
|
| T |
213541 |
ac |
213542 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 7041426 - 7041341
Alignment:
| Q |
36 |
ttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc |
121 |
Q |
| |
|
||||| |||||||||||||||| | ||| || | ||| ||| |||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
7041426 |
ttttggacttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc |
7041341 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 7012731 - 7012644
Alignment:
| Q |
34 |
tgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc |
121 |
Q |
| |
|
||||||| |||||||||||||||||| ||| | ||||| ||| ||| |||| |||||||||||| ||||||||| | ||||||||| |
|
|
| T |
7012731 |
tgttttggacttggatcaaggtcgacattcgcttttgtctgattgtcccgaatattccaacttgttatggccacctgcagagtggatc |
7012644 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 7025667 - 7025580
Alignment:
| Q |
34 |
tgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc |
121 |
Q |
| |
|
||||||| ||||||||| |||||| | ||| | |||| ||| |||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
7025667 |
tgttttggacttggatctaggtcggcattcgcttttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatc |
7025580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 7046718 - 7046672
Alignment:
| Q |
75 |
attctcctgaattttccaacttgttctggccacctcccgagtggatc |
121 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
7046718 |
attctcctgaatattccaacttgttttggccacctccaaagtggatc |
7046672 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 7046647 - 7046586
Alignment:
| Q |
149 |
tgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgcttaattta |
210 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || |||||||| ||||| ||||||||||| |
|
|
| T |
7046647 |
tgttatcttgcattgaaaggtttctaatgtgatagtgatatagctttactatgcttaattta |
7046586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 9343766 - 9343639
Alignment:
| Q |
33 |
gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg |
132 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||| || ||||| ||| |||||||| || | |||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
9343766 |
gtgtttttcacatggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccggagtggatcgtcaaaagttg |
9343667 |
T |
 |
| Q |
133 |
aattcgtaagtgagtatgttatcttgca |
160 |
Q |
| |
|
|| |||| | |||| ||||||||||| |
|
|
| T |
9343666 |
cctttgtaactaagtaagttatcttgca |
9343639 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 9448235 - 9448072
Alignment:
| Q |
33 |
gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg |
132 |
Q |
| |
|
||||||| ||||||||||||| | |||||| || ||||| ||| |||||| ||| |||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
9448235 |
gtgttttttacttggatcaaggcctgctttcacctttgtctgattgccctgaaattttgaacttgttctggccacctccagagtggatcgtccaaagtag |
9448136 |
T |
 |
| Q |
133 |
aattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatcttta |
196 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| || ||| || | ||||| |||| |||||| |
|
|
| T |
9448135 |
ccttcgtaattgagtatgttgtcttacattgaaacgtttctaatttgattgtaatatttcttta |
9448072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 9495052 - 9495171
Alignment:
| Q |
79 |
tcctgaattttccaacttgttctggccacctcccgagtggatcgtcaa---aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctca |
175 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||||||||| ||||||||| | ||| |||||||||||||||||||| |||| | | | | |
|
|
| T |
9495052 |
tcctgaatattttaacttgttctggccacctccggattggatcgtcaaaagaagctgaatgcataactgagtatgttatcttgcattaaaagctttttaa |
9495151 |
T |
 |
| Q |
176 |
tgttattgtgatatatcttt |
195 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
9495152 |
tgtgattgtgatatagcttt |
9495171 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 9432772 - 9432678
Alignment:
| Q |
69 |
tgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctgaattc-gtaagtgagtatgttatcttgcatt |
162 |
Q |
| |
|
||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| | || ||| |||||||||||||||||||| |
|
|
| T |
9432772 |
tgtctgattatcctgaatattacaacttgttctggccacctccggagtggatcgtcaaaagccacagtcattaactgagtatgttatcttgcatt |
9432678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 9617668 - 9617757
Alignment:
| Q |
44 |
ttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctga |
133 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| || |||||||| | ||||||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
9617668 |
ttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggccacctccggattggatcttcaaaagctga |
9617757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 9329757 - 9329670
Alignment:
| Q |
33 |
gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggat |
120 |
Q |
| |
|
||||||| |||||||||||||||| |||| || |||| ||| |||||||| || ||| ||||||||||||||||| |||||||| |
|
|
| T |
9329757 |
gtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcctgaatatttcaagttgttctggccacctccagagtggat |
9329670 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 9416380 - 9416342
Alignment:
| Q |
131 |
tgaattcgtaagtgagtatgttatcttgcattgaaaggt |
169 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9416380 |
tgaattcgtaaatgagtatgctatcttgcattgaaaggt |
9416342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 9442087 - 9442125
Alignment:
| Q |
131 |
tgaattcgtaagtgagtatgttatcttgcattgaaaggt |
169 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
9442087 |
tgaaatcgtaaatgagtatgttatcttgcattgaaaggt |
9442125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 9626680 - 9626769
Alignment:
| Q |
44 |
ttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctga |
133 |
Q |
| |
|
|||||||||||||| |||| ||||| ||| ||| || ||||| || ||||||||| | ||||||||| || |||||| |||| |||||| |
|
|
| T |
9626680 |
ttggatcaaggtcgggtttcgtctgtatctcattatcatgaatatttcaacttgttttcgccacctccggattggatcctcaagagctga |
9626769 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 41985552 - 41985448
Alignment:
| Q |
33 |
gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg |
132 |
Q |
| |
|
||||||| |||||||||||| || | |||| || ||||| ||| |||||| | |||| || ||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
41985552 |
gtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcgtcaaaagctg |
41985453 |
T |
 |
| Q |
133 |
aattc |
137 |
Q |
| |
|
|||| |
|
|
| T |
41985452 |
cattc |
41985448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 8814591 - 8814705
Alignment:
| Q |
79 |
tcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaag---ctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctca |
175 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| ||||||| ||| |||| |||||| | ||| | |||||||||||||||||||||||| ||| | |
|
|
| T |
8814591 |
tcctgaatattctaaattgttctggccacctccaaagtggatggtctaaagaagctgaatgcataacagtgtatgttatcttgcattgaaaggtttctaa |
8814690 |
T |
 |
| Q |
176 |
tgttattgtgatata |
190 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
8814691 |
tgtgattgtgatata |
8814705 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 235061 - 234984
Alignment:
| Q |
127 |
aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttatcttgctt |
204 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||| || | |||||||| || ||||||| ||||| |
|
|
| T |
235061 |
aagctgaattagtaacagagtatgttatcttgcattgaaaggtttctaatctgattgtgatgtagctttatcgtgctt |
234984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 246715 - 246645
Alignment:
| Q |
127 |
aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttat |
197 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||||||| ||| |||| ||| ||||||| |||||| |
|
|
| T |
246715 |
aagctgaattagtaacagagtatattatcttgcattgaaaggtttctaatgtgattttgatatagctttat |
246645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 4428490 - 4428420
Alignment:
| Q |
92 |
aacttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcatt |
162 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || |||| ||| ||| |||||||||||||||||||| |
|
|
| T |
4428490 |
aacttgttctggccacctacagagtggatcggcgaatgctgcgttcctaaatgagtatgttatcttgcatt |
4428420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 231421 - 231352
Alignment:
| Q |
128 |
agctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatatctttat |
197 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| ||| |||| | ||||||||| |||||| |
|
|
| T |
231421 |
agctgaattagtaacaaagtatgttatcttgcattgaaaggtttctaatgtaactgtgatatagctttat |
231352 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 251660 - 251724
Alignment:
| Q |
127 |
aagctgaattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgttattgtgatatat |
191 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| ||| |||| ||||| |||||| |
|
|
| T |
251660 |
aagctgaattagtaacaaagtatgttatcttgcattgaaaggtttctaatgtcattgtcatatat |
251724 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 4439719 - 4439649
Alignment:
| Q |
92 |
aacttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcatt |
162 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || | || ||| ||| |||||||||||||||||||| |
|
|
| T |
4439719 |
aacttgttctggccacctgcagagtggatcggcgaatgttgcgttcctaaatgagtatgttatcttgcatt |
4439649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 3686614 - 3686688
Alignment:
| Q |
92 |
aacttgttctggccacctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcattgaaa |
166 |
Q |
| |
|
|||||||| ||||||||||| || | |||||||||| |||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
3686614 |
aacttgttttggccacctcctgattcaatcgtcaaaaactgaattcataattgagtttgttatcttgcattgaaa |
3686688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 450315 - 450459
Alignment:
| Q |
33 |
gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg |
132 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| | ||||| ||| ||| || | || ||| ||||||||||||||||| || |||||| || || |
|
|
| T |
450315 |
gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc--actgagttg |
450412 |
T |
 |
| Q |
133 |
aattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgtt |
179 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
450413 |
aattcataacagagtatgttctcttgcattgaaaggtttctaatgtt |
450459 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 3679905 - 3679865
Alignment:
| Q |
126 |
aaagctgaattcgtaagtgagtatgttatcttgcattgaaa |
166 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
3679905 |
aaagctgaattcgtcactgagtatgttatcatgcattgaaa |
3679865 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 3695579 - 3695539
Alignment:
| Q |
69 |
tgtctaattctcctgaattttccaacttgttctggccacct |
109 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
3695579 |
tgtctaatgatcctgaatattccaacttgttctggccacct |
3695539 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 20694472 - 20694596
Alignment:
| Q |
33 |
gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg |
132 |
Q |
| |
|
||||||| || |||||||||| ||| |||||| || |||| ||| |||||||| || |||||||||||||| ||||| ||||||||||| ||| ||| |
|
|
| T |
20694472 |
gtgttttccatttggatcaagatcggctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatcgtaaaatcctg |
20694571 |
T |
 |
| Q |
133 |
aattcgtaagtgagtatgttatctt |
157 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
20694572 |
catttctagttgagtatgttatctt |
20694596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 33541468 - 33541413
Alignment:
| Q |
107 |
cctcccgagtggatcgtcaaaagctgaattcgtaagtgagtatgttatcttgcatt |
162 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
33541468 |
cctccagagtggatcgtcaaaagctgcattcgtaactgagtatgttaacctgcatt |
33541413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 18570509 - 18570467
Alignment:
| Q |
95 |
ttgttctggccacctcccgagtggatcgtcaaaagctgaattc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
18570509 |
ttgttctggccacctcccgagtggatcgtcaatagctaaattc |
18570467 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University