View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13814_low_35 (Length: 309)
Name: NF13814_low_35
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 446383 - 446189
Alignment:
| Q |
1 |
gatttgaacaagaacgcgtttctcttcatattctttgtagagacgacgattcaaaaaccataaacctgcccaaccaagtgaaaacaaacttcctaacact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
446383 |
gatttgaacaagaacgcgtttctcttcatattctttgtagagacgacgattcaaaaaccataaacctgcccaaccaagtgaaaacagacttcctaacact |
446284 |
T |
|
| Q |
101 |
acgaaaccttccaagattcctcttccccaacccatcctaagatcgattgattgatccgatttcgaaacaacgctagattctgttttaatggaaaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
446283 |
acgaaaccttccaagattcctcttccccaacccatcctaagatcgattgattgatccgatttcgaaacaacgctagattctgttttaatggaaaa |
446189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 446184 - 446131
Alignment:
| Q |
243 |
aattgcaattttcaatgtcatatttctactttaaatcatttaatatgtgttttt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
446184 |
aattgcaattttcaatgtcatatttctactttaaatcatttaatatgtgttttt |
446131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University