View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_42 (Length: 254)
Name: NF13814_low_42
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_42 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 13103303 - 13103059
Alignment:
| Q |
10 |
ataattctcaactttatgatagctggcaaagacaccactgcaaacacactttcatggttcttctatatgctatgcaagaaccctcttgtagaggacaaga |
109 |
Q |
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| T |
13103303 |
ataattctcaactttatgatagctggcaaagataccactgcaaacactctttcatggttcttctatatgctatgcaagaaccctcttgtagaggacaaga |
13103204 |
T |
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| Q |
110 |
ttgtgcaagaaataaaagatgttacttgtagccatgaaagtgaactcaacaacatagatgaattttctggcaatttaacggatgtaatacttgataaaat |
209 |
Q |
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| T |
13103203 |
ttgtgcaagaaataaaagatgttacttgtagccatgaaagtgaactcaacaacatagatgaatttgctggcaatttaacggatgtaatacttgataaaat |
13103104 |
T |
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| Q |
210 |
gcattatcttcatgcagcactcacagagacattgagattgtatcc |
254 |
Q |
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| T |
13103103 |
gcattatcttcatgcagcactcacagagacattgagattgtatcc |
13103059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 13114277 - 13114036
Alignment:
| Q |
10 |
ataattctcaactttatgatagctggcaaagacaccactgcaaacacactttcatggttcttctatatgctatgcaagaaccctcttgtagaggacaaga |
109 |
Q |
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| T |
13114277 |
ataattctcaactttatgatagctggcaaagacactactgcaaatactctttcatggttcttctatatgctatgcaagaaccctcttgtagaggacaaga |
13114178 |
T |
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| Q |
110 |
ttgtgcaagaaataaaagatgttacttgtagccatgaaagtgaactcaacaacatagatgaattttctggcaatttaacggatgtaatacttgataaaat |
209 |
Q |
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| T |
13114177 |
ttgtgcaagaaataagagatgttacttgtagccatgaaagtgaactcaacagcatagatgagtttgttgccaatttaacagacttaatactcgataaaat |
13114078 |
T |
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| Q |
210 |
gcattatcttcatgcagcactcacagagacattgagattgta |
251 |
Q |
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| T |
13114077 |
gcattatcttcatgcaacactcacagagacattgagattgta |
13114036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 13098149 - 13097908
Alignment:
| Q |
10 |
ataattctcaactttatgatagctggcaaagacaccactgcaaacacactttcatggttcttctatatgctatgcaagaaccctcttgtagaggacaaga |
109 |
Q |
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| T |
13098149 |
ataattctcaactttatgatagctggcaaagacaccactgcaaatactctttcatggttcttctacatgttatgcaagaaccctattgtggaggacaaga |
13098050 |
T |
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| Q |
110 |
ttgtgcaagaaataaaagatgttacttgtagccatgaaagtgaactcaacaacatagatgaattttctggcaatttaacggatgtaatacttgataaaat |
209 |
Q |
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| T |
13098049 |
ttgtgcaagaaataagagatgttacttgtttccatgaaagtgaactcagcaacatagatgagtttgctaccaatctaacagactcaatacttgataaaat |
13097950 |
T |
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| Q |
210 |
gcattatcttcatgcagcactcacagagacattgagattgta |
251 |
Q |
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| T |
13097949 |
gcattatcttcatgcagcactcacagagaccttaagattgta |
13097908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 13078178 - 13078092
Alignment:
| Q |
10 |
ataattctcaactttatgatagctggcaaagacaccactgcaaacacactttcatggttcttctatatgctatgcaagaaccctctt |
96 |
Q |
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| T |
13078178 |
ataattctgaactttatgattgctggaaaagacacaagtgccaatactttgtcatggttcttctacatgctttgcaagaaccctctt |
13078092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 13077990 - 13077946
Alignment:
| Q |
198 |
acttgataaaatgcattatcttcatgcagcactcacagagacatt |
242 |
Q |
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| T |
13077990 |
acttgacaaaatgcattatctccatgcagcactaacagagacatt |
13077946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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