View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_43 (Length: 253)
Name: NF13814_low_43
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 3446166 - 3446389
Alignment:
| Q |
17 |
aattgacatatcaacttatctacatatgaagcttgtgggtgccactggatcatgtatagccatatgtttgaatcatttgatgtcaatgttctgtcgtgta |
116 |
Q |
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| T |
3446166 |
aattgacatatcaacttatctacatatgaagcttgtgggtgccactggatcatgtatagccatatgtttgaatcatttgatgtcaatgttctgtcgtgta |
3446265 |
T |
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| Q |
117 |
aaaatataaccaagaaaattgtcgaaaattttggatattgcaaccacatagatcaattctatttcannnnnnngactctatcattgttttattttgttct |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
3446266 |
aaaataaaaccaagaaaattgtcgaaaattttggatattgcaaccacatagatcaattctatttca-ttttttgattctatcattgttttattttgttct |
3446364 |
T |
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| Q |
217 |
tacttactccatattatttcttcat |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
3446365 |
tacttactccatattatttcttcat |
3446389 |
T |
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