View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13814_low_47 (Length: 248)
Name: NF13814_low_47
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 43225346 - 43225572
Alignment:
| Q |
6 |
catagggaagtgcatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatcc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225346 |
cataaggaagtgcatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatcc |
43225445 |
T |
|
| Q |
106 |
aggaatagcctcttgatagaatgcaaagtcttctgatcccaccgtcggctgccagtctttaattttatcaacaccaagtaacctcccagctacactttca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225446 |
aggaatagcctcttgatagaatgcaaagtcttctgatcccaccgtcggctgctggtctttaattttatcaacaccaagtaacctcccagctacactttca |
43225545 |
T |
|
| Q |
206 |
aaatagtcatgcaagccaccattgttt |
232 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
43225546 |
aaatagtcatgcaagccaccattgttt |
43225572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 41652583 - 41652357
Alignment:
| Q |
6 |
catagggaagtgcatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatcc |
105 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652583 |
cataaggaagtgcatcttcgttgactttgtaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatcc |
41652484 |
T |
|
| Q |
106 |
aggaatagcctcttgatagaatgcaaagtcttctgatcccaccgtcggctgccagtctttaattttatcaacaccaagtaacctcccagctacactttca |
205 |
Q |
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| T |
41652483 |
aggcaaagccgcttgatagaaggcgaagtcttctgatcccaacattggctgctggtccttaactttatcaacaccaagtaacctcccagcgacactttga |
41652384 |
T |
|
| Q |
206 |
aaatagtcatgcaagccaccattgttt |
232 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
41652383 |
aaatggtcatgcaagccaccattgttt |
41652357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 43202634 - 43202855
Alignment:
| Q |
11 |
ggaagtgcatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatccaggaa |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43202634 |
ggaagtacatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcttccattccgaggaggaagatgtatccaggaa |
43202733 |
T |
|
| Q |
111 |
tagcctcttgatagaatgcaaagtcttctgatcccaccgtcggctgccagtctttaattttatcaacaccaagtaacctcccagctacactttcaaaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| | | || ||| | |||||| ||||||| |||| || || ||||| || ||||||| |||||| |
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| T |
43202734 |
tagcctcttgatagaatgcaaagtcttctgatcccatcattggttgcatgcctttaactttatcagcaccgagcaaactcccggcgacactttgaaaata |
43202833 |
T |
|
| Q |
211 |
gtcatgcaagccaccattgttt |
232 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
43202834 |
gtcatgcaagccaccatcgttt |
43202855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 41658711 - 41658485
Alignment:
| Q |
6 |
catagggaagtgcatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatcc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||| | ||| |||||||||||| |||||||| |||||||||| || ||||| |||||| |
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| T |
41658711 |
cataaggaagtacatcttcgttgactttgaaatagggcgagtgccatgacctaagacgttcaacagagacatcttccattccgacgatgaagacgtatcc |
41658612 |
T |
|
| Q |
106 |
aggaatagcctcttgatagaatgcaaagtcttctgatcccaccgtcggctgccagtctttaattttatcaacaccaagtaacctcccagctacactttca |
205 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| | | || | | |||| ||||||||| || || || |||||||| ||||||| | |
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| T |
41658611 |
aggcatagcctcttgatagaatgcaaagtcttctgatcccatcaatagatgatggcccttaactttatcaacgccgagcaaactcccagcaacactttga |
41658512 |
T |
|
| Q |
206 |
aaatagtcatgcaagccaccattgttt |
232 |
Q |
| |
|
|||||||||||||||| | |||||||| |
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| T |
41658511 |
aaatagtcatgcaagctatcattgttt |
41658485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 43210728 - 43210942
Alignment:
| Q |
18 |
catcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcctccattccgaggaggaagatgtatccaggaatagcctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| |||||||||| || ||||| ||||||||| |||||||| |
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| T |
43210728 |
catcttcgttgactttgaaatagggtgagtgccatgacctaagacgttcaacagagacatcttccattccgacgatgaagacgtatccaggcatagcctc |
43210827 |
T |
|
| Q |
118 |
ttgatagaatgcaaagtcttctgatcccaccgtcggctgccagtctttaattttatcaacaccaagtaacctcccagctacactttcaaaatagtcatgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| | | || | |||||| |||||||| || || || |||||||| ||||||| ||||||||| ||| |
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| T |
43210828 |
ttgatagaatgcaaagtcttctgatcccatcaatagatgatggcctttaactttatcaatgccgagcaaactcccagcaacactttgaaaatagtcgtgc |
43210927 |
T |
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| Q |
218 |
aagccaccattgttt |
232 |
Q |
| |
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|||| | |||||||| |
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| T |
43210928 |
aagctatcattgttt |
43210942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 43216758 - 43216818
Alignment:
| Q |
18 |
catcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatc |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| |
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|
| T |
43216758 |
catcttcgttgactttgaaatagggtgagtgccatgacctaagacgttcaacagagacatc |
43216818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 42918999 - 42918910
Alignment:
| Q |
57 |
gaagacgttcaactgagacatcctccattccgaggaggaagatgtatccaggaatagcctcttgatagaatgcaaagtcttctgatccca |
146 |
Q |
| |
|
||||| ||||||| ||||||| |||||| ||||||||||| ||||||| || | ||||||||||||||||| |||||||| |||||||| |
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|
| T |
42918999 |
gaagatgttcaacaaagacatcttccatttcgaggaggaagctgtatcccggtaaagcctcttgatagaatgaaaagtcttatgatccca |
42918910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 45289293 - 45289381
Alignment:
| Q |
57 |
gaagacgttcaactgagacatcctccattccgaggaggaagatgtatccaggaatagcctcttgatagaatgcaaagtcttctgatccca |
146 |
Q |
| |
|
||||| |||||| |||||||| |||||| ||||||| ||| ||||||| || | ||||||||||||||||| ||||||||||||||||| |
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| T |
45289293 |
gaagatgttcaatagagacatcttccatttcgaggag-aagctgtatcccggtaaagcctcttgatagaatgaaaagtcttctgatccca |
45289381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 19248944 - 19248910
Alignment:
| Q |
112 |
agcctcttgatagaatgcaaagtcttctgatccca |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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|
| T |
19248944 |
agcctcttgatagaatgaaaagtcttctgatccca |
19248910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 19322128 - 19322094
Alignment:
| Q |
112 |
agcctcttgatagaatgcaaagtcttctgatccca |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19322128 |
agcctcttgatagaatgaaaagtcttctgatccca |
19322094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 5069356 - 5069408
Alignment:
| Q |
94 |
gaagatgtatccaggaatagcctcttgatagaatgcaaagtcttctgatccca |
146 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||| ||||||||| ||||||| |
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|
| T |
5069356 |
gaagaagtatccaggtatgacctcttgatagaatgaaaagtcttcggatccca |
5069408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 34322198 - 34322112
Alignment:
| Q |
57 |
gaagacgttcaactgagacatcctccattccgaggaggaagatgtatccaggaatagcctcttgatagaatgcaaagtcttctgatc |
143 |
Q |
| |
|
||||| ||||||| |||| ||| |||||||||||||||||| ||||||| || | ||| |||| |||||||| |||||||| ||||| |
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|
| T |
34322198 |
gaagatgttcaacagagatatcttccattccgaggaggaagttgtatcccggtaaagcttctttatagaatgaaaagtcttatgatc |
34322112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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