View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13814_low_56 (Length: 201)
Name: NF13814_low_56
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_56 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 47532775 - 47532958
Alignment:
| Q |
18 |
gccttgatatgcatctatgacctgtacgttttggaagaaagtgacagtgaaagtgaagccacagatactgatagtgaagccacggacaccgatagtgaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47532775 |
gccttgatatgcatctatgacctgtaccttttggaagaaagtgacagtgaaagtgaagccacagatactgatagtgaagccacggacaccgatagtgaag |
47532874 |
T |
|
| Q |
118 |
ccacaaacactgacagtgaagccaccgacactgatagtgaaagtaccggaaggaaaactagtgatcaatagaaaaggaaacaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47532875 |
ccacaaacactgacagtgaagccaccgacactgatagtgaaagtactggaaggaaaactagtgatcaatagaaaaggaaacaac |
47532958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 39583676 - 39583603
Alignment:
| Q |
21 |
ttgatatgcatctatgacctgtacgttttggaagaaagtgacagtgaaagtgaagccacagatactgatagtga |
94 |
Q |
| |
|
|||||||| |||||| ||||| | ||||||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
39583676 |
ttgatatgtatctattacctgaaatatttggaagaaagtgacagtgaaagtgaagacacagacacagatagtga |
39583603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 39627263 - 39627335
Alignment:
| Q |
21 |
ttgatatgcatctatgacctgtacgttttg---gaagaaagtgacagtgaaagtgaagccacagatactgata |
90 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||| ||| || ||||||| |
|
|
| T |
39627263 |
ttgataggcatctattacctgtacattttggaagaagaaagtgatagtgaaagtgaagacacggacactgata |
39627335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University