View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_low_6 (Length: 606)

Name: NF13814_low_6
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_low_6
NF13814_low_6
[»] chr1 (1 HSPs)
chr1 (16-606)||(6449305-6449893)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Original strand, 6449305 - 6449893
Alignment:
Q  16 atcacaagcttattgttgaaaaatttcacgtaaaaacacaagaagagagaattaaataacgtaaacaattagtcgtgttgttgtataataataagataat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6449305 atcacaagcttattgttgaaaaatttcacgtaaaaacacaagaagagagaattaaataacgtaaacaattagtcgtgttgttgtataataataagataat 6449404  T
Q  116 aaacaaaattaaagcaaagnnnnnnncatttcccggagaatctagagcgcatcaggcgctgaccatggcttcggaatctattaacaaatggaattaacaa 215  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6449405 aaacaaaattaaagcaaagtttttttcatttcccggagaatctagagcgcatcaggcgctgaccatggcttcggaatctattaacaaatggaattaacaa 6449504  T
Q  216 gtctatcaaattggtaatgatatcttgctgtcacattgatcaacaagtaaaaacaaagaatgagaagtatnnnnnnntgagggatcaagcatgggggtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  6449505 gtctatcaaattggtaatgatatcttgctgtcacattgatcaacaagtaaaaacaaagaatgagaagtataaaaaaatgagggatcaagcatgggggtac 6449604  T
Q  316 gagcataattgaaacacacaaacagccataaatgccatatgttataataattatattaattg------tttttaaaacnnnnnnnttcatctccgtgcaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||        |||||||||| ||||    
T  6449605 gagcataattgaaacacacaaacagccataaatgccatatgttataataattatattaattgtttttttttttaaaa----aaaattcatctccgcgcaa 6449700  T
Q  410 ctgttcatactaatccgttcgaagtaacttagattcatttaacgactcaagtatataacatttgtgtcctaaaatgttagnnnnnnnnnnnnnnnnaacc 509  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                ||||    
T  6449701 ctgtgcatactaatccgttcgaagtaacttagattcatttaacgactcaagtatataacatttgtgtcataaaatgttag----ttttttttttttaacc 6449796  T
Q  510 agatacatattctatgcgcgtaactgcaaaaactaatccatcgagttaggtagaatcaaaatcgatggcaaagcactccctcaagagatttaacatt 606  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  6449797 agatacatattctatgcgcgtaactgcaaagactaatccatcgagttgggtagaatcaaaatcggtggcaaagtactccctcaagagatttaacatt 6449893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University