View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13814_low_7 (Length: 582)
Name: NF13814_low_7
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13814_low_7 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Complemental strand, 35426796 - 35426249
Alignment:
| Q |
18 |
acctagatccttacaaaactaaaaaagtagtgtatgtaaaaatcatgatagttgagcttgaggggcttgaatgtggctggctatgtgttaactcctctaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426796 |
acctagatccttgcaaaactaaaaaagtagtgtatgtaaaaatcatgatagttgag------gggcttgaatgtggctggctatgtgttaactcctctaa |
35426703 |
T |
|
| Q |
118 |
ctgtctcaataggccaatttgccagtaactgaaataaaaacttttgatttttccgctgcaatatggagtatgcatcttctctattggttaaactttgaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426702 |
ctgtctcaataggccaatttgccagaaactgaaataaaaactttagatttttccgctgcaatatggagtatgcatcttctctattggttaaactttgaaa |
35426603 |
T |
|
| Q |
218 |
aaggaaactccaaggaagtaggaaacaaaggggacctagtcccccttttactgttttataaatcaaaccacatggtcaccaccacacatcacaatcaaca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
35426602 |
aaggaaactccaaggaagtaggaaacaaaggggacctagtcccccttttactgttttataaatcaaaacacatggtcacgaccacacatcacaatcaaca |
35426503 |
T |
|
| Q |
318 |
agaaggggaaattcaagttaatcaatgccattcctttctgtaaaaatttggtgtctattatagttgactctgtcagacatccctggccgaggctgagatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426502 |
agaaggggaaattcaagttaatcaatgccattcctttctgtaaaaatttggtgtctattatagttgactctgtcagacatccctggccgaggctgagatc |
35426403 |
T |
|
| Q |
418 |
gatcctctacagcacagatgatgtctcaaacagatgctctcagcgttaatcacactctgatcacacggaaatcaaagacacacttttatgatcctaaaaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35426402 |
gatcctctacagcacagatgatgtctcaaacagatgctctccgcgttaatc-----------acacggaaatcaaagatacacttgtatgatcctaaaaa |
35426314 |
T |
|
| Q |
518 |
acagattatgttcaagtaaggttgtgttcatcgatcgacgcaagttatacaaagacttgaattct |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426313 |
acagattatgttcaagtaaggttgtgttcatcgatcgacgcaagttatacaaagacttgaattct |
35426249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 35374889 - 35375002
Alignment:
| Q |
18 |
acctagatccttacaaaactaaaaaagtagtgtatgtaaaaatcatgatagttgagcttgaggggcttgaatgtggctggctatgtgttaactcctctaa |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
35374889 |
acctagatccctacaaaactaaaaaagtagtgtatgtaaaaatcatgatag------ttgaggggcttgaatg----tggctatgtggcaacttctctac |
35374978 |
T |
|
| Q |
118 |
ctgtctcaataggccaatttgcca |
141 |
Q |
| |
|
|||| ||| ||||||||||||||| |
|
|
| T |
35374979 |
ctgtttcagtaggccaatttgcca |
35375002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University