View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13814_low_8 (Length: 552)

Name: NF13814_low_8
Description: NF13814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13814_low_8
NF13814_low_8
[»] chr7 (8 HSPs)
chr7 (13-519)||(7126887-7127393)
chr7 (32-83)||(41489953-41490004)
chr7 (32-82)||(23721200-23721250)
chr7 (32-82)||(30898982-30899032)
chr7 (21-83)||(43295490-43295552)
chr7 (50-83)||(28359164-28359197)
chr7 (50-82)||(10406578-10406610)
chr7 (44-84)||(12305039-12305079)
[»] chr4 (10 HSPs)
chr4 (21-83)||(28496496-28496558)
chr4 (32-85)||(22870716-22870769)
chr4 (17-73)||(26806556-26806612)
chr4 (21-83)||(3586138-3586200)
chr4 (122-167)||(25324155-25324200)
chr4 (232-269)||(29113506-29113543)
chr4 (33-73)||(18435927-18435967)
chr4 (50-90)||(28232086-28232126)
chr4 (123-167)||(30305429-30305473)
chr4 (216-263)||(50816533-50816583)
[»] chr6 (6 HSPs)
chr6 (186-263)||(35236522-35236601)
chr6 (34-83)||(18286662-18286711)
chr6 (232-269)||(19712619-19712656)
chr6 (239-272)||(28068426-28068459)
chr6 (122-174)||(12268944-12268996)
chr6 (33-73)||(30539483-30539523)
[»] chr3 (7 HSPs)
chr3 (122-161)||(13825067-13825106)
chr3 (27-84)||(34250342-34250399)
chr3 (215-269)||(44136928-44136985)
chr3 (32-82)||(40337868-40337918)
chr3 (237-269)||(45941143-45941175)
chr3 (29-73)||(50057088-50057132)
chr3 (32-80)||(51917942-51917990)
[»] chr8 (7 HSPs)
chr8 (22-84)||(12605623-12605685)
chr8 (21-83)||(38445262-38445324)
chr8 (215-291)||(25925874-25925953)
chr8 (21-82)||(44440938-44440999)
chr8 (21-80)||(25925888-25925947)
chr8 (235-269)||(13051432-13051466)
chr8 (238-272)||(25933707-25933741)
[»] chr1 (9 HSPs)
chr1 (21-83)||(31789400-31789462)
chr1 (237-285)||(2106591-2106639)
chr1 (29-93)||(32752356-32752419)
chr1 (21-82)||(1289640-1289701)
chr1 (239-291)||(31789413-31789465)
chr1 (237-285)||(32751741-32751789)
chr1 (231-259)||(33248345-33248373)
chr1 (231-259)||(33268517-33268545)
chr1 (186-263)||(52923734-52923813)
[»] chr2 (8 HSPs)
chr2 (215-291)||(11967110-11967189)
chr2 (232-272)||(21374291-21374331)
chr2 (44-83)||(9889310-9889349)
chr2 (32-83)||(36901204-36901255)
chr2 (32-83)||(36901438-36901489)
chr2 (123-173)||(7748149-7748199)
chr2 (29-83)||(26760818-26760872)
chr2 (33-73)||(40010037-40010077)
[»] chr5 (6 HSPs)
chr5 (32-82)||(904745-904795)
chr5 (32-82)||(4796420-4796470)
chr5 (232-269)||(37781854-37781891)
chr5 (33-73)||(2716609-2716649)
chr5 (232-272)||(28156087-28156127)
chr5 (122-170)||(31974358-31974406)
[»] scaffold0245 (1 HSPs)
scaffold0245 (21-82)||(16045-16106)
[»] scaffold0060 (1 HSPs)
scaffold0060 (232-269)||(20597-20634)
[»] scaffold0029 (1 HSPs)
scaffold0029 (232-269)||(76909-76946)


Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Original strand, 7126887 - 7127393
Alignment:
Q  13 aatattataagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaacataatatgtaccagcgcctatcaaatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7126887 aatattataagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaatcataatatgtaccagcgcctatcaaatg 7126986  T
Q  113 gggccaccgccatttatatctacgcaccaaatccaataatgttgggtgtgaggggtgtattgnnnnnnnccagaagtcccacataggataaagatgaagt 212  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||    
T  7126987 gggccaccatcatttatatctacgcaccaaatccaataatgttgggtgtgaggggtatattgagaaaaaccagaagtcccacataggataaagatgaagt 7127086  T
Q  213 tagaaatgagtttataaatggcaaccctcaccttacaagctggttttgtaaagatgaatttgatccaatataagaacctcaactctaaaattacaaaaca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7127087 tagaaatgagtttataaatggcaaccctcaccttacaagctggttttgtaaaaatgaatttgatccaatataagaacctcaactctaaaattacaaaaca 7127186  T
Q  313 gattatgtattcgattaatatgtcccgacaacacaaagatttttcacattttcaatagttgaatcactaaaaatagttaagtttaatcatacatctactt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127187 gattatgtattcgattaatatgtcccgacaacacaaagatttttcacattttcaatagttgaatcactaaaaatagttaagtttaatcatacatctactt 7127286  T
Q  413 taaaagttatacaaagtgtaatttgtgattggttgacaggtgaaagtgtattaaaattaataatttgctaataacttatagtatttagtaacatttattt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127287 taaaagttatacaaagtgtaatttgtgattggttgacaggtgaaagtgtattaaaattaataatttgctaataacttatagtatttagtaacatttattt 7127386  T
Q  513 ttgcaaa 519  Q
    |||||||    
T  7127387 ttgcaaa 7127393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 41489953 - 41490004
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||| |||| ||||| |||||||||||||| | |||||||||||||||||    
T  41489953 ccctcaccttacaagccggttttgtaaggatgagctaggcccaatataaaaa 41490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 23721200 - 23721250
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| ||||| |||| ||||||||| ||||||||||||||||||    
T  23721200 ccctcaccttaaaagccggtttagtaaggatgagttaggcccaatataaaa 23721250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 30899032 - 30898982
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||||||| ||||| ||||| || ||||| ||||||||||||||||||    
T  30899032 ccctcatcttacaagccggttttttacggatgagttaggcccaatataaaa 30898982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 43295490 - 43295552
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||| ||| ||||| ||||  |||| | |||||||||||| |||||||||||||||||||    
T  43295490 aagagtggcactcctcaccttaccagccggatttgtaaggatgagttaggcccaatataaaaa 43295552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 28359164 - 28359197
Alignment:
Q  50 gttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||||||||||| |||||||||||||||||||    
T  28359164 gttttgtaaggatgagttaggcccaatataaaaa 28359197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 10406610 - 10406578
Alignment:
Q  50 gttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||||||||||| ||||||||||||||||||    
T  10406610 gttttgtaaggatgagttaggcccaatataaaa 10406578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 12305079 - 12305039
Alignment:
Q  44 aagcccgttttgtaaggatgtgttaggcccaatataaaaaa 84  Q
    ||||| ||| |||||||||| ||||||||||||||||||||    
T  12305079 aagccggttctgtaaggatgagttaggcccaatataaaaaa 12305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 28496558 - 28496496
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||| ||||||||| |||| ||||| |||||||||||||| ||||||| |||||||||||    
T  28496558 aagagtggcacccctcaccttacaagccggttttgtaaggatgagttaggctcaatataaaaa 28496496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 22870716 - 22870769
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaac 85  Q
    |||||||||||||||||  |||| |||||||| |||||||||||||||||||||    
T  22870716 ccctcatcttataagccgattttataaggatgagttaggcccaatataaaaaac 22870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26806556 - 26806612
Alignment:
Q  17 ttataagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||||||| ||||| ||||| |||| ||||| |||||||||||||| |||||||||    
T  26806556 ttataagagagacactcctcaacttacaagccagttttgtaaggatgagttaggccc 26806612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3586138 - 3586200
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||||||||||||| |||| || ||  ||||||||||||| ||||  |||||||||||||    
T  3586138 aagagtgacacccctcaccttacaaaccaattttgtaaggatgagttaaccccaatataaaaa 3586200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 25324200 - 25324155
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgtgagggg 167  Q
    |||||||||||||||||||||  |||||| | ||||||||||||||    
T  25324200 ccatttatatctacgcaccaagcccaatagtattgggtgtgagggg 25324155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 29113506 - 29113543
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  29113506 ggcaatcctcaccttacaagctggttttgtaaggatga 29113543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 18435967 - 18435927
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||| |||| ||||| ||||||||||||||||||||||||    
T  18435967 cctcaccttacaagccggttttgtaaggatgtgttaggccc 18435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 28232126 - 28232086
Alignment:
Q  50 gttttgtaaggatgtgttaggcccaatataaaaaacataat 90  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  28232126 gttttgtaaggatgagttagacccaatataaaaaaaataat 28232086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 30305429 - 30305473
Alignment:
Q  123 catttatatctacgcaccaaatccaataatgttgggtgtgagggg 167  Q
    ||||||||| || ||||||||||||||| ||||||| ||||||||    
T  30305429 catttatatttatgcaccaaatccaatagtgttgggcgtgagggg 30305473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 50816583 - 50816533
Alignment:
Q  216 aaatgagtttataaatgg---caaccctcaccttacaagctggttttgtaa 263  Q
    |||||| |||||||||||   ||| ||||||||||||||||||||||||||    
T  50816583 aaatgaatttataaatgggggcaatcctcaccttacaagctggttttgtaa 50816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 35236601 - 35236522
Alignment:
Q  186 aagtcccacataggataaagatgaagttagaaatgagtttataaa--tggcaaccctcaccttacaagctggttttgtaa 263  Q
    |||||||||||||||| ||||| | ||  ||||||||||||||||  || || ||||||||||||||| |||||||||||    
T  35236601 aagtcccacataggatgaagataacgtatgaaatgagtttataaaagtgacacccctcaccttacaagttggttttgtaa 35236522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 18286662 - 18286711
Alignment:
Q  34 ctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||| |||| |||||  ||||||||||||| |||||||||||||||||||    
T  18286662 ctcaccttacaagccaattttgtaaggatgagttaggcccaatataaaaa 18286711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 19712656 - 19712619
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  19712656 ggcaatcctcaccttacaagctggttttgtaaggatga 19712619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 28068459 - 28068426
Alignment:
Q  239 ctcaccttacaagctggttttgtaaagatgaatt 272  Q
    |||||||||||||||| |||||||||||||||||    
T  28068459 ctcaccttacaagctgattttgtaaagatgaatt 28068426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 12268944 - 12268996
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgtgaggggtgtattg 174  Q
    ||||||||||  |||||||||| |||||| |||||||  ||||||||||||||    
T  12268944 ccatttatatacacgcaccaaacccaatagtgttgggcatgaggggtgtattg 12268996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 30539483 - 30539523
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  30539483 cctcatcttataacccggttttgtaaggatgggttaggccc 30539523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 13825067 - 13825106
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgt 161  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13825067 ccatttatatctacgcaccaagtccaataatgttgggtgt 13825106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 34250399 - 34250342
Alignment:
Q  27 gacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaa 84  Q
    |||| |||||| |||| ||| | |||||||||||||| ||||||||||||||||||||    
T  34250399 gacaaccctcaccttacaagtcggttttgtaaggatgagttaggcccaatataaaaaa 34250342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 44136928 - 44136985
Alignment:
Q  215 gaaatgagtttataaa---tggcaaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||||||||||||||   | ||| |||||||||||||||| ||||||||||||||||    
T  44136928 gaaatgagtttataaaatgtcgcatccctcaccttacaagccggttttgtaaagatga 44136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 40337918 - 40337868
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| |||||  ||||||||||||| ||||||||||||||||||    
T  40337918 ccctcaccttacaagccgattttgtaaggatgagttaggcccaatataaaa 40337868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 45941175 - 45941143
Alignment:
Q  237 ccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||||||||||||||||||||||||| |||||    
T  45941175 ccctcaccttacaagctggttttgtaaggatga 45941143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 50057088 - 50057132
Alignment:
Q  29 cacccctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||||||| |||| ||||| |||||||||||||| |||||||||    
T  50057088 cacccctcaccttacaagccagttttgtaaggatgagttaggccc 50057132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 51917942 - 51917990
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataa 80  Q
    |||||| |||| ||||| |||||||||||||| ||| ||||||||||||    
T  51917942 ccctcagcttacaagccagttttgtaaggatgagttgggcccaatataa 51917990  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 12605623 - 12605685
Alignment:
Q  22 agagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaa 84  Q
    |||||| ||||||||| |||| || || |||||||||||||| |||||||| |||||||||||    
T  12605623 agagtggcacccctcaccttacaaaccggttttgtaaggatgagttaggccaaatataaaaaa 12605685  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 38445262 - 38445324
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||||||||| |||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  38445262 aagagtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaa 38445324  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 25925874 - 25925953
Alignment:
Q  215 gaaatgagtttataaa---tggcaaccctcaccttacaagctggttttgtaaagatgaatttgatccaatataagaacct 291  Q
    ||||||||||||||||   ||||| |||||| ||||||| |||||||||||||||||| || |  ||||||||| |||||    
T  25925874 gaaatgagtttataaagagtggcacccctcatcttacaacctggttttgtaaagatgagttaggcccaatataataacct 25925953  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 44440938 - 44440999
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||||||||||||| |||| |||||  ||||| ||||||| |||||||| |||||||||    
T  44440938 aagagtgacacccctcaccttacaagccgattttggaaggatgagttaggcctaatataaaa 44440999  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 25925888 - 25925947
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataa 80  Q
    ||||||| |||||||||||||| || |  ||||||||| |||| ||||||||||||||||    
T  25925888 aagagtggcacccctcatcttacaacctggttttgtaaagatgagttaggcccaatataa 25925947  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 13051466 - 13051432
Alignment:
Q  235 aaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||||||||||||||||||||||||||| |||||    
T  13051466 aaccctcaccttacaagctggttttgtaaggatga 13051432  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 25933741 - 25933707
Alignment:
Q  238 cctcaccttacaagctggttttgtaaagatgaatt 272  Q
    |||||||||||||||||||||||||| ||||||||    
T  25933741 cctcaccttacaagctggttttgtaaggatgaatt 25933707  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 31789400 - 31789462
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||| |||| |||| |||| ||||| ||||||||||||||  ||||||||||||||||||    
T  31789400 aagagtggcacctctcaccttacaagccggttttgtaaggatgaattaggcccaatataaaaa 31789462  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 2106591 - 2106639
Alignment:
Q  237 ccctcaccttacaagctggttttgtaaagatgaatttgatccaatataa 285  Q
    |||||||||||||||| |||||||||| ||||| || ||||||||||||    
T  2106591 ccctcaccttacaagccggttttgtaaggatgatttagatccaatataa 2106639  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 32752419 - 32752356
Alignment:
Q  29 cacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaacataatatg 93  Q
    ||||||||| |||||||||| |||||||||||||| ||||| |||| ||| | ||||||||||||    
T  32752419 cacccctcaccttataagccggttttgtaaggatgagttagacccattat-acaaacataatatg 32752356  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 1289701 - 1289640
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||| ||||||||| |||| ||||| |||||||| ||||| ||||  ||||||||||||    
T  1289701 aagagtggcacccctcaccttacaagccggttttgtacggatgagttaaacccaatataaaa 1289640  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 31789413 - 31789465
Alignment:
Q  239 ctcaccttacaagctggttttgtaaagatgaatttgatccaatataagaacct 291  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| |||||    
T  31789413 ctcaccttacaagccggttttgtaaggatgaattaggcccaatataaaaacct 31789465  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 32751789 - 32751741
Alignment:
Q  237 ccctcaccttacaagctggttttgtaaagatgaatttgatccaatataa 285  Q
    |||||||||||| ||| |||||| |||| |||||||||| |||||||||    
T  32751789 ccctcaccttaccagccggttttataaaaatgaatttgacccaatataa 32751741  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 33248373 - 33248345
Alignment:
Q  231 tggcaaccctcaccttacaagctggtttt 259  Q
    |||||||||||||||||||||||||||||    
T  33248373 tggcaaccctcaccttacaagctggtttt 33248345  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 33268545 - 33268517
Alignment:
Q  231 tggcaaccctcaccttacaagctggtttt 259  Q
    |||||||||||||||||||||||||||||    
T  33268545 tggcaaccctcaccttacaagctggtttt 33268517  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 52923813 - 52923734
Alignment:
Q  186 aagtcccacataggataaagatgaagttagaaatgagtttataaa--tggcaaccctcaccttacaagctggttttgtaa 263  Q
    ||||||||||||||||  |||| | |   ||||||||||||||||  || || ||||||||||||||| |||||||||||    
T  52923813 aagtcccacataggatggagataacgaatgaaatgagtttataaaagtgacacccctcaccttacaagttggttttgtaa 52923734  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 11967189 - 11967110
Alignment:
Q  215 gaaatgagtttataaa---tggcaaccctcaccttacaagctggttttgtaaagatgaatttgatccaatataagaacct 291  Q
    ||||||||||||||||   ||||| || ||||||||||||||||||||||||  |||| || || ||||||||| |||||    
T  11967189 gaaatgagtttataaaaagtggcacccgtcaccttacaagctggttttgtaagaatgagttagacccaatataaaaacct 11967110  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 21374291 - 21374331
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatgaatt 272  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  21374291 ggcaaccttcaccttacaagctggttttgtaaggatgaatt 21374331  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 9889349 - 9889310
Alignment:
Q  44 aagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  9889349 aagccggttttgtaaggatgagttaggcccaatataaaaa 9889310  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 36901204 - 36901255
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||| |||| |||||  ||||||||||||| |||||||||||||||||||    
T  36901204 ccctcaccttacaagccatttttgtaaggatgagttaggcccaatataaaaa 36901255  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 36901438 - 36901489
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||| |||| |||||  ||||||||||||| |||||||||||||||||||    
T  36901438 ccctcaccttacaagccatttttgtaaggatgagttaggcccaatataaaaa 36901489  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 7748149 - 7748199
Alignment:
Q  123 catttatatctacgcaccaaatccaataatgttgggtgtgaggggtgtatt 173  Q
    |||||||||||| |||||||||||||||||| ||||  |||||| ||||||    
T  7748149 catttatatctatgcaccaaatccaataatgatgggcatgagggatgtatt 7748199  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 26760872 - 26760818
Alignment:
Q  29 cacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||||| |||| ||||| || ||||||||||| ||||| |||||||||||||    
T  26760872 cacccctcaccttacaagccggtattgtaaggatgagttagacccaatataaaaa 26760818  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 40010037 - 40010077
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||| |||| ||||| ||||||||||||||||||||||||    
T  40010037 cctcaccttacaagccggttttgtaaggatgtgttaggccc 40010077  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 904795 - 904745
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| ||||| |||||||||||||| || |||||||||||||||    
T  904795 ccctcaccttacaagccggttttgtaaggatgagtcaggcccaatataaaa 904745  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 4796420 - 4796470
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| ||||  |||||||||||||| ||||||||||||||||||    
T  4796420 ccctcaccttacaagcgggttttgtaaggatgagttaggcccaatataaaa 4796470  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 37781891 - 37781854
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  37781891 ggcaatcctcaccttacaagctggttttgtaaggatga 37781854  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 2716609 - 2716649
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  2716609 cctcaccttataagccggttttgtaaggatgagttaggccc 2716649  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 28156087 - 28156127
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatgaatt 272  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  28156087 ggcaatcctcaccttacaagccggttttgtaaggatgaatt 28156127  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 31974358 - 31974406
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgtgaggggtgt 170  Q
    ||||||||||| || ||||||  |||||| |||||||||||||||||||    
T  31974358 ccatttatatccacacaccaagcccaatagtgttgggtgtgaggggtgt 31974406  T

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Target: scaffold0245 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 16106 - 16045
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||| ||||||||| |||| ||||| |||||||| ||||| ||||  ||||||||||||    
T  16106 aagagtggcacccctcaccttacaagccggttttgtacggatgagttaaacccaatataaaa 16045  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 20597 - 20634
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  20597 ggcaatcctcaccttacaagctggttttgtaaggatga 20634  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 76909 - 76946
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaagatga 269  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  76909 ggcaatcctcaccttacaagccggttttgtaaagatga 76946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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