View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_high_14 (Length: 253)
Name: NF13815_high_14
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 45535131 - 45534906
Alignment:
| Q |
18 |
catacgaccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatgggtgctaaatgtattagca |
117 |
Q |
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| T |
45535131 |
catacggccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagca |
45535032 |
T |
|
| Q |
118 |
tgtataaagcaacaacatatacacagagacactaacatgtgaacaccaataattattttgaaaaataatataattcaattgtcggtgtcgaatataggaa |
217 |
Q |
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| T |
45535031 |
tgtataaagcaacaacatatacatagagacactaacatgtgaacactgataattattttaaaaaataatataatttaattgtcggtgtcgaatacgggga |
45534932 |
T |
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| Q |
218 |
cgtattagacaccaaacacgcctatg |
243 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
45534931 |
cgtattagacaccaaacatgcctatg |
45534906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 44338381 - 44338518
Alignment:
| Q |
27 |
ccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatc-tggttaggaa-tgggtgctaaatgtattagcatgtataa |
124 |
Q |
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| T |
44338381 |
ccttaaattagttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataa |
44338480 |
T |
|
| Q |
125 |
agcaacaacatatacacagagacactaacatgtgaaca |
162 |
Q |
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| T |
44338481 |
aacgtcgacatatacccagagacattaacatgtgaaca |
44338518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 24564339 - 24564510
Alignment:
| Q |
25 |
ccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatgggtgctaaatgtattagcatgtataa |
124 |
Q |
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| T |
24564339 |
ccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattggcatgtataa |
24564438 |
T |
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| Q |
125 |
agcaacaacatatacacagagacactaacatgtgaacaccaataattattttgaaaaataatataattcaat |
196 |
Q |
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|||| | |||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||| |
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| T |
24564439 |
agcatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaat |
24564510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 9800566 - 9800736
Alignment:
| Q |
25 |
ccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatgggtgctaaatgtattagcatgtataa |
124 |
Q |
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||||||||||||||| ||||||||||||||||| ||| || |||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||| |
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| T |
9800566 |
ccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatgaatatggttatgaatgggtattaaatgtattagcatgtataa |
9800665 |
T |
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| Q |
125 |
agcaacaacatatacacagagacactaacatgtgaacaccaataattattttgaaaaataatataattcaat |
196 |
Q |
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|||| || |||||||| |||||||||||||| |||| ||| ||||||| ||| ||||||||||||||||||| |
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| T |
9800666 |
agcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaataatataattcaat |
9800736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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