View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_high_18 (Length: 234)
Name: NF13815_high_18
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_high_18 |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 35776509 - 35776297
Alignment:
| Q |
5 |
caccgccattgtacaagtttgtctcgtataaattcacaaacattgtaacaatagtgatatttgaacaaaaatggattcttattctccctctacgcatatc |
104 |
Q |
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| T |
35776509 |
caccgccattgtacaagtttgtctcgtataaattcacaaacattgtaacaatagtgatatttgaacaaaaatggattcttattctccctctacgcatatt |
35776410 |
T |
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| Q |
105 |
catcaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcaca |
204 |
Q |
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| T |
35776409 |
caacaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaacttgccaaactctttcgttgcaaaggttttcaca |
35776310 |
T |
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| Q |
205 |
taacctttgtgaa |
217 |
Q |
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||||||||||||| |
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| T |
35776309 |
taacctttgtgaa |
35776297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 35854721 - 35854612
Alignment:
| Q |
108 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
207 |
Q |
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||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35854721 |
caaaagcctcatgttgtattagtaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
35854622 |
T |
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| Q |
208 |
cctttgtgaa |
217 |
Q |
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| T |
35854621 |
cctttgtgaa |
35854612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 35869330 - 35869221
Alignment:
| Q |
108 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
207 |
Q |
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||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35869330 |
caaaagcctcatgttgtattagcaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
35869231 |
T |
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| Q |
208 |
cctttgtgaa |
217 |
Q |
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|||||||||| |
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| T |
35869230 |
cctttgtgaa |
35869221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 35842213 - 35842104
Alignment:
| Q |
108 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
207 |
Q |
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|||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35842213 |
caaaagccacatgttgtattagcaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
35842114 |
T |
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| Q |
208 |
cctttgtgaa |
217 |
Q |
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|||||||||| |
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| T |
35842113 |
cctttgtgaa |
35842104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 35759981 - 35759872
Alignment:
| Q |
108 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
207 |
Q |
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||||||| ||||||||||| || |||| |||| ||| |||||||| || || || |||||| |||| |||||||| |||||||||||||| ||||||| |
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| T |
35759981 |
caaaagctacatgctgtattagtgccatacccagcacagggtcatgttaatcccttaatgcaactagctaaactcctgcgttgcaacggtttccacataa |
35759882 |
T |
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| Q |
208 |
cctttgtgaa |
217 |
Q |
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|||||||||| |
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| T |
35759881 |
cctttgtgaa |
35759872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 35738156 - 35738080
Alignment:
| Q |
108 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcct |
184 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| || |||||||||||||||||||| ||| |||| |
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| T |
35738156 |
caaaagcctcatgtagtttgtgtaccatttccagcacaaggtcacgtaaaccctttcatgcaattagctaaaatcct |
35738080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 1828 - 1946
Alignment:
| Q |
99 |
catatccatcaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggtt |
198 |
Q |
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|||| ||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||| | |||||||| |||| |
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| T |
1828 |
catacccaacaaaaaccacatgctgtatttgtaccatttccagcacaaggtcatgtgaacccaatgatgcaactagccaaactcttccgttgcaaaggtt |
1927 |
T |
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| Q |
199 |
ttcacataacctttgtgaa |
217 |
Q |
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| T |
1928 |
tccatataacctttgtgaa |
1946 |
T |
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