View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_high_6 (Length: 341)
Name: NF13815_high_6
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 48234932 - 48234637
Alignment:
| Q |
17 |
aaagagctatagatagatgaaaataatttgtacgtacgagggaatcaaacaaaggatggaagtctccggttcaaagacgacatgacatgtatgaagaagt |
116 |
Q |
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| T |
48234932 |
aaagagctatagatagatgcaaataatttgtacgtacgagggaatcaaacaaa-------agtctccggttcaaagac---atgacatgtatgaagaagt |
48234843 |
T |
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| Q |
117 |
gaagagtggaggaacacactactcatactcctactccattagtgatactatttgctatggacaaattaaatgtgtaccttattatatatat--tttctgc |
214 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48234842 |
gaagagtggaggaacacgctactc------ctactccattagtgatactatttgctatggacaaattaaatgtgtaccttattatatatatattttctgc |
48234749 |
T |
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| Q |
215 |
gtcatttcctgtttccaattaattgtctctattctttattctttgcatacaacaaaaataggtatatgccttatcttgttttcgagcaggaacggtttga |
314 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48234748 |
gtgctttcctgtttccaattaattgtctctattctttattctttgcatacaacaaaaataggtatatgccttatcttgttttcgagcaggaacggtttga |
48234649 |
T |
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