View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_high_7 (Length: 336)
Name: NF13815_high_7
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 21876012 - 21876320
Alignment:
| Q |
17 |
tatttttgggaatataaagaaatcataactaaaaaatattatctagtctagttagaaattttatatggcaaagtttgaaaatatattaatttcaatgtgg |
116 |
Q |
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| T |
21876012 |
tatttttgggaatataaagaaatcataactaaaaaatattatctagtctagttagaaattttatatggcaaagtttgaaaatatattaatttcaatgtgg |
21876111 |
T |
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| Q |
117 |
aaaattttaaatagatatcaacacttgaaaattctacaaaagataacatat-----nnnnnnnnnntagtaccaacg-gtggataaaaataagatgctta |
210 |
Q |
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| T |
21876112 |
aaaattttaaatagatatcaacacttgaaaattctagaaaagataacatataaaaaaaataaaaaatagtaccaacgattggataaaaataagatgctta |
21876211 |
T |
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| Q |
211 |
ttattagtttttcaaaatatacaaaagtttaaatgagttggaactttatgcttcaaaagagcttcgacgaactctcgttaaaaagattattatgctaata |
310 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21876212 |
ttattagtttttcaaaacatacaaaagtttaaatgagttgg-gctttatgtctcaaaaaagcttcgacaaactctcgttaaaaagattattatgctaata |
21876310 |
T |
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| Q |
311 |
atatgagttg |
320 |
Q |
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|||||||||| |
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| T |
21876311 |
atatgagttg |
21876320 |
T |
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