View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_11 (Length: 281)
Name: NF13815_low_11
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 2007234 - 2007459
Alignment:
| Q |
36 |
ttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaacttgtcttgcaagactgttgcaactttacattttcaggaat |
135 |
Q |
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||||||| |||||||||||||||||||| ||||| | | ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2007234 |
ttatatcggatgagtttcttatctcagttgcaaagggtgctgttgagtgtctgaaaaaacttgtcctgcaagactgttgcaactttacattttcaggaat |
2007333 |
T |
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| Q |
136 |
cttttatgttttatccaaatgtcaatatgttcaattcttagatcttcgaaaagctgactttctaactgatcaatgtatcaacaagttatcgatatttctt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2007334 |
cttttatgttttatccaaatgtcaatatgttcaatgcttagattttcgaaaagctgactttctaactgatcaatgtatcaacaagttttcaatatttctt |
2007433 |
T |
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| Q |
236 |
cataacttgacctctataaaccttag |
261 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2007434 |
cataacttgacctctataaaccttag |
2007459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 265
Target Start/End: Complemental strand, 1743148 - 1742919
Alignment:
| Q |
36 |
ttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaacttgtcttgcaagactgttgcaactttacattttcaggaat |
135 |
Q |
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||||||| |||||||||||||||||||||||| ||| | ||| | ||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
1743148 |
ttatatcggatgagtttcttatctcagtcgcagacggtgctgttaattttctgaaaaaacttgtccttcaagactgttgcaactttacattttcaggaat |
1743049 |
T |
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| Q |
136 |
cttttatgttttatccaaatgtcaatatgttcaattcttagatcttcgaaaagctgactttctaactgatcaatgtatcaacaagttatcgatatttctt |
235 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743048 |
attttatgttttatccaaatgtcaatatgttcaatccttagatcttcgtaaagccgactttctaactgatcaatgtatcaacaagttatcgatatttctt |
1742949 |
T |
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| Q |
236 |
cataacttgacctctataaaccttagtggt |
265 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1742948 |
attaacttgacctctataaaccttagtggt |
1742919 |
T |
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