View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_12 (Length: 261)
Name: NF13815_low_12
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_12 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 28966836 - 28966742
Alignment:
| Q |
148 |
atgaaaagacaaatagatggaagtggcagtccttcaacattgaagtacagaaaaatgtactccgatcaattgctgcttttctcgattctatatct |
242 |
Q |
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| T |
28966836 |
atgaaaaaacaaatagatggaagtggcagtccgtcaacattgaagtacagaaaaatgtactcagatcaattgctgcttttctcgattctatatct |
28966742 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 28966973 - 28966899
Alignment:
| Q |
10 |
acatcatcacccttcatcgccgtcttctccattccttaaaccttggcaccaggtctctccgaattcattcttcgc |
84 |
Q |
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| T |
28966973 |
acatcatcacccttcatcgccgtcttctccattccttaaaccttggcaccaggtctctccgaattcattcttcgc |
28966899 |
T |
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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 34634879 - 34634809
Alignment:
| Q |
148 |
atgaaaagacaaatagatggaagtggcagtccttcaacattgaagtacagaaaaatgtactccgatcaatt |
218 |
Q |
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| T |
34634879 |
atgagaagacaaatagacggaagtggcagcgcatcaacattgatgtgcagaaaaatgtactacgatcaatt |
34634809 |
T |
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Target: scaffold0769 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 5035 - 5105
Alignment:
| Q |
148 |
atgaaaagacaaatagatggaagtggcagtccttcaacattgaagtacagaaaaatgtactccgatcaatt |
218 |
Q |
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| T |
5035 |
atgagaagacaaatagacggaagtggcagcgcatcaacattgatgtgcagaaaaatgtactacgatcaatt |
5105 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 13791650 - 13791569
Alignment:
| Q |
148 |
atgaaaagacaaatagatggaagtggcagtccttcaacattgaagtacagaaaaatgtactccgatcaattgctgcttttct |
229 |
Q |
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| T |
13791650 |
atgagaagacaaatagatagaagtggtagtgcgtcaacattgaagtgcataaaaatgtactgtgatcaattactacttttct |
13791569 |
T |
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