View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_15 (Length: 252)
Name: NF13815_low_15
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 35585940 - 35585720
Alignment:
| Q |
14 |
cacaacactctaatcctcctcccagaccaatagattagtctccttcttccaagcccacgtctcttttacctctcccccatctatggttttcatctcccta |
113 |
Q |
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| T |
35585940 |
cacaacactctaatcctcctcccataccaatagattagtctccttcttccaagcccacgtctcttttacctctcccccatctatagttttcatctcccta |
35585841 |
T |
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| Q |
114 |
attgtcgccattttattatcatataactcatacaaccttttgaatctcacaaatagcgcctctccatcaatctaaagatctacccaagagagcgtagaag |
213 |
Q |
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| T |
35585840 |
atcgtcgccatttgattatcagataactcatacaaccttttgaacctcacacttaacgtctctctatcaatctaaagatctatccaaaagagcatagaag |
35585741 |
T |
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| Q |
214 |
attcatcgctcacattccgtc |
234 |
Q |
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||||||| | |||| |||||| |
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| T |
35585740 |
attcatcacccacagtccgtc |
35585720 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 41191797 - 41191855
Alignment:
| Q |
99 |
gttttcatctccctaattgtcgccattttattatcatataactcatacaaccttttgaa |
157 |
Q |
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|||||||||||||||| |||| ||| |||||| ||| |||||| |||||||||| |||| |
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| T |
41191797 |
gttttcatctccctaactgtcaccaatttattttcagataacttatacaaccttctgaa |
41191855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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